Resource

Id DNase-seq/ENCSR845CFBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR845CFB [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 8 days, kit ligand for 8 days, hydrocortisone succinate for 8 days, erythropoietin for 8 days"]
Description
Labels
  • accession: ENCSR845CFB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000837/
  • biosample_summary: Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 8 days, kit ligand for 8 days, hydrocortisone succinate for 8 days, erythropoietin for 8 days
  • date_created: 2015-03-29T22:10:48.470802+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR845CFB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (25 years) treated with interleukin-3 for 8 days, kit ligand for 8 days, hydrocortisone succinate for 8 days, erythropoietin for 8 days
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR845CFB float

DNase-seq_ENCSR845CFB
DNase-seq ENCSR845CFB [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 8 days, kit ligand for 8 days, hydrocortisone succinate for 8 days, erythropoietin for 8 days"]
 HISTOGRAM FOR DNase-seq_ENCSR845CFB [2.61, 2.78e+03]
n
28,770,480
mean
58.4
sd
89.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 287704800.89% 191506
chr1 2891440 1.16% 19242
chr2 2252530 0.93% 14997
chr3 1891540 0.95% 12596
chr4 1216680 0.64% 8102
chr5 1443870 0.80% 9611
chr6 1734940 1.02% 11550
chr7 1414650 0.89% 9413
chr8 1175320 0.81% 7824
chr9 1219290 0.88% 8117
chr10 1286560 0.96% 8562
chr11 1440570 1.07% 9589
chr12 1475870 1.11% 9819
chr13 689190 0.60% 4585
chr14 965050 0.90% 6425
chr15 958560 0.94% 6380
chr16 1019320 1.13% 6788
chr17 1400560 1.68% 9320
chr18 561080 0.70% 3736
chr19 1198180 2.04% 7974
chr20 771930 1.20% 5139
chr21 352940 0.76% 2348
chr22 669640 1.32% 4458
chrX 682180 0.44% 4542
chrY 58590 0.10% 389
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 191506 150 470 150.23 150
global segment-length histogram

Files

Filename Size md5
ENCFF530BVC.bed.gz 2.54 MB 7946ba8c80738d718265c0966ddfd50e
ENCFF530BVC.tabix.bed.gz 1.77 MB 8dc931af7afb3f8b2896a3297433a6fc
ENCFF530BVC.tabix.bed.gz.tbi 503.08 KB 4e7b13bb3477fa0c5c463b374e72c833
genomic_resource.yaml 1.87 KB 9476f6d1145c1dceb7be76e360fbd027
statistics/