DNase-seq_ENCSR842KCP
DNase-seq ENCSR842KCP [biosample_summary="Homo sapiens cardiac muscle cell originated from RUES2"]
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| Id: | DNase-seq/ENCSR842KCP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR842KCP [biosample_summary="Homo sapiens cardiac muscle cell originated from RUES2"] |
| Description: |
status: released biological_replicates: Rep 1 summary: embryo output_type: peaks audit_internal_action: Archived analysis {ENCAN376MXK|/analyses/ENCAN376MXK/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF520VZX|/files/ENCFF520VZX/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR842KCP | float |
DNase-seq_ENCSR842KCP |
DNase-seq ENCSR842KCP [biosample_summary="Homo sapiens cardiac muscle cell originated from RUES2"]
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[3, 1.28e+05] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF054OJL.bed.gz | 2.08 MB | 38b2a9f2de3a03b69aa0b1d9043ba956 |
| ENCFF054OJL.bed.gz.dvc | 101.0 B | 06368f8ff2b29a5c5acefc1cf4f7f32d |
| ENCFF054OJL.tabix.bed.gz | 1.79 MB | 9f600aff71a0f305f639b1609be0171a |
| ENCFF054OJL.tabix.bed.gz.dvc | 107.0 B | 000ba94590edc793c20f93da30a7e5d5 |
| ENCFF054OJL.tabix.bed.gz.tbi | 705.93 KB | a2af15a91741e6cba89eb700b547a31b |
| ENCFF054OJL.tabix.bed.gz.tbi.dvc | 110.0 B | 0929a8e5044121798e0e93731235b187 |
| genomic_resource.yaml | 2.18 KB | e23e632ca60f637a354ec4ff175bcec0 |
| genomic_resource_original.yaml | 2.08 KB | 765341685382c4e9b8a97ee966ce2f0e |
| statistics/ |