Resource
| Id | DNase-seq/ENCSR841UCZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR841UCZ [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF274OYN|/files/ENCFF274OYN/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30578362 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR841UCZ | float |
DNase-seq_ENCSR841UCZ |
DNase-seq ENCSR841UCZ [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
|
 |
[0.36, 86] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7752394 | 0.24% | 42268 |
| chr1 | 792365 | 0.32% | 4284 |
| chr2 | 533854 | 0.22% | 2919 |
| chr3 | 417498 | 0.21% | 2249 |
| chr4 | 263013 | 0.14% | 1434 |
| chr5 | 338530 | 0.19% | 1879 |
| chr6 | 448792 | 0.26% | 2444 |
| chr7 | 345940 | 0.22% | 1894 |
| chr8 | 275966 | 0.19% | 1535 |
| chr9 | 321179 | 0.23% | 1769 |
| chr10 | 339005 | 0.25% | 1867 |
| chr11 | 395873 | 0.29% | 2151 |
| chr12 | 402050 | 0.30% | 2171 |
| chr13 | 152179 | 0.13% | 828 |
| chr14 | 271178 | 0.25% | 1458 |
| chr15 | 254602 | 0.25% | 1411 |
| chr16 | 332631 | 0.37% | 1817 |
| chr17 | 479691 | 0.58% | 2606 |
| chr18 | 118593 | 0.15% | 655 |
| chr19 | 545192 | 0.93% | 2886 |
| chr20 | 219792 | 0.34% | 1231 |
| chr21 | 90625 | 0.19% | 496 |
| chr22 | 193528 | 0.38% | 1074 |
| chrX | 213027 | 0.14% | 1169 |
| chrY | 7291 | 0.01% | 41 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 42268 | 3 | 720 | 183.41 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF991ADD.bed.gz | 469.98 KB | 1cce62a3e7a82a9a206a52d1609a9bb5 |
| ENCFF991ADD.tabix.bed.gz | 424.17 KB | b70985979d92d17aa2d745fbda5dc475 |
| ENCFF991ADD.tabix.bed.gz.tbi | 214.98 KB | 6c85f8712554a62fa81ab473912a0dfa |
| genomic_resource.yaml | 2.21 KB | 24532f1de53b97faa3d444858feb5001 |
| statistics/ |