| Id: | DNase-seq/ENCSR841UCZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR841UCZ [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF274OYN|/files/ENCFF274OYN/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30578362 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR841UCZ | float |
DNase-seq_ENCSR841UCZ |
DNase-seq ENCSR841UCZ [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
|
 |
[0.36, 86] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF991ADD.bed.gz | 469.98 KB | 1cce62a3e7a82a9a206a52d1609a9bb5 |
| ENCFF991ADD.bed.gz.dvc | 100.0 B | 8e3c3ee03a8b321de25a83a18d100303 |
| ENCFF991ADD.tabix.bed.gz | 424.17 KB | b70985979d92d17aa2d745fbda5dc475 |
| ENCFF991ADD.tabix.bed.gz.dvc | 106.0 B | da07d024aecd4b71117b92dbf75a1b27 |
| ENCFF991ADD.tabix.bed.gz.tbi | 214.98 KB | 6c85f8712554a62fa81ab473912a0dfa |
| ENCFF991ADD.tabix.bed.gz.tbi.dvc | 110.0 B | bf728e4a511b8e4509bb50e799154afa |
| genomic_resource.yaml | 2.21 KB | 24532f1de53b97faa3d444858feb5001 |
| genomic_resource_original.yaml | 2.03 KB | 7c515870fd631be9fa54afe7dc5929d7 |
| statistics/ |