| Id: | DNase-seq/ENCSR840USW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR840USW [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF680JXS|/files/ENCFF680JXS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 33245510 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR840USW | float |
DNase-seq_ENCSR840USW |
DNase-seq ENCSR840USW [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
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[0.271, 83.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF674DZH.bed.gz | 621.0 KB | 63dbc6b8b3361b9e0a6bcb70580ae8ae |
| ENCFF674DZH.bed.gz.dvc | 100.0 B | a87b14e56986d76543752bb9da467839 |
| ENCFF674DZH.tabix.bed.gz | 567.01 KB | a59037a2b3f8294f208b3049b6f2b8be |
| ENCFF674DZH.tabix.bed.gz.dvc | 106.0 B | 731eacd0edc8aea68129d7a7caf02a02 |
| ENCFF674DZH.tabix.bed.gz.tbi | 264.51 KB | db266031021a84482cb0e92bc7bbf1d5 |
| ENCFF674DZH.tabix.bed.gz.tbi.dvc | 110.0 B | 3cef77e0eebb97f9cb26de49518da5eb |
| genomic_resource.yaml | 2.44 KB | 92bba933097c1be9ca45f80f81bf3a59 |
| genomic_resource_original.yaml | 2.21 KB | 7a72b7d3026e3e9dd1e027033c7ea184 |
| statistics/ |