| Id: | DNase-seq/ENCSR840QLA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR840QLA [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours output_type: peaks audit_warning: Alignment file {ENCFF130ZOM|/files/ENCFF130ZOM/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22241340 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR840QLA | float |
DNase-seq_ENCSR840QLA |
DNase-seq ENCSR840QLA [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours"]
|
 |
[0.406, 74.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF316SKC.bed.gz | 476.19 KB | f4eb97f4d4dd5d2e5fa1ed28653c6437 |
| ENCFF316SKC.bed.gz.dvc | 100.0 B | af1a719f3ce140c7c4f42ad81541c343 |
| ENCFF316SKC.tabix.bed.gz | 429.52 KB | 87a6b84f2cfcde30cc5936efe6d20251 |
| ENCFF316SKC.tabix.bed.gz.dvc | 106.0 B | fd3ee71c6672353914628c2a51768c07 |
| ENCFF316SKC.tabix.bed.gz.tbi | 234.65 KB | 913a4a936059c211162fd9866a5d7244 |
| ENCFF316SKC.tabix.bed.gz.tbi.dvc | 110.0 B | 20d43a043ece26dd081d704de98ebd36 |
| genomic_resource.yaml | 2.42 KB | ce5914c4e0282c096ca28379f3a8f5a7 |
| genomic_resource_original.yaml | 2.2 KB | e7609a05f755c5b66bcf981922d27575 |
| statistics/ |