DNase-seq_ENCSR839RAJ
DNase-seq ENCSR839RAJ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (85 years)"]
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| Id: | DNase-seq/ENCSR839RAJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR839RAJ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (85 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (85 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF615RWO|/files/ENCFF615RWO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR839RAJ | float |
DNase-seq_ENCSR839RAJ |
DNase-seq ENCSR839RAJ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (85 years)"]
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[0.0974, 15.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF994UFI.bed.gz | 455.89 KB | 91a752b033d99c204bab3c64a69b1ed3 |
| ENCFF994UFI.bed.gz.dvc | 100.0 B | c2f358f3130b700e2c7d67a5ea552ab5 |
| ENCFF994UFI.tabix.bed.gz | 412.19 KB | ccddf19cc812c96780d9afebde91901a |
| ENCFF994UFI.tabix.bed.gz.dvc | 106.0 B | 35d3fcd4f1316112140ef7bfe1d23f07 |
| ENCFF994UFI.tabix.bed.gz.tbi | 200.33 KB | 997e43e572c6e8f2f43f4dad0e50bc2f |
| ENCFF994UFI.tabix.bed.gz.tbi.dvc | 110.0 B | 9f7396543e3014e8d179851fefdff65e |
| genomic_resource.yaml | 2.23 KB | cfa44261db52816979068b7ef122e874 |
| genomic_resource_original.yaml | 2.08 KB | 618f6a52c6d2f621f1459bbc094a3ef4 |
| statistics/ |