DNase-seq_ENCSR839GHA
DNase-seq ENCSR839GHA [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (89 years)"]
×
| Id: | DNase-seq/ENCSR839GHA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR839GHA [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (89 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (89 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF038WEZ|/files/ENCFF038WEZ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR839GHA | float |
DNase-seq_ENCSR839GHA |
DNase-seq ENCSR839GHA [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (89 years)"]
|
|
[0.0607, 21.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF558YOL.bed.gz | 835.31 KB | 75dfc4b4703effe21312ad9667bb26a7 |
| ENCFF558YOL.bed.gz.dvc | 100.0 B | f3c6f5b95bf4504fa0bce08ba8260d81 |
| ENCFF558YOL.tabix.bed.gz | 756.38 KB | fcad96d6f62f89fbdeb2cdfa76522d12 |
| ENCFF558YOL.tabix.bed.gz.dvc | 106.0 B | 79bf37d9c05609b107a5a3d22713bbbf |
| ENCFF558YOL.tabix.bed.gz.tbi | 330.55 KB | 988e680b21a423ffd43b7261fbd87ba9 |
| ENCFF558YOL.tabix.bed.gz.tbi.dvc | 110.0 B | 9ca04721bae80890feeca20a94236822 |
| genomic_resource.yaml | 2.21 KB | 0b4a2265bc1fab80d950228db26da290 |
| genomic_resource_original.yaml | 2.06 KB | 509d479b27a0144a9ec1243898840d45 |
| statistics/ |