Resource

Id DNase-seq/ENCSR837ZSScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR837ZSS [biosample_summary="Homo sapiens T-cell female adult (19 years)"]
Description
Labels
  • accession: ENCSR837ZSS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (19 years)
  • date_created: 2020-04-12T19:00:09.047855+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR837ZSS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (19 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR837ZSS float

DNase-seq_ENCSR837ZSS
DNase-seq ENCSR837ZSS [biosample_summary="Homo sapiens T-cell female adult (19 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR837ZSS [0.36, 51.1]
n
5,879,857
mean
6.86
sd
6.55

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 58798570.18% 32499
chr1 610303 0.25% 3387
chr2 403355 0.17% 2229
chr3 313365 0.16% 1735
chr4 198254 0.10% 1083
chr5 253516 0.14% 1395
chr6 327882 0.19% 1812
chr7 279731 0.18% 1547
chr8 209028 0.14% 1174
chr9 233044 0.17% 1295
chr10 250185 0.19% 1390
chr11 305053 0.23% 1682
chr12 293665 0.22% 1638
chr13 113719 0.10% 629
chr14 210149 0.20% 1157
chr15 187373 0.18% 1045
chr16 254262 0.28% 1395
chr17 371396 0.45% 2050
chr18 82804 0.10% 465
chr19 439421 0.75% 2349
chr20 163309 0.25% 924
chr21 67025 0.14% 375
chr22 148498 0.29% 843
chrX 164520 0.11% 900
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32499 1 720 180.92 180
global segment-length histogram

Files

Filename Size md5
ENCFF487LCQ.bed.gz 358.31 KB 26e5a23a6b089f3f740574813965a33f
ENCFF487LCQ.tabix.bed.gz 324.64 KB 08264a4687af8b0be851dca32d31b27d
ENCFF487LCQ.tabix.bed.gz.tbi 177.9 KB 9b9ea32b146074a6a05c939522ca3421
genomic_resource.yaml 1.8 KB 63d7cc0b23a8e49027393d31776f6bf4
statistics/