DNase-seq_ENCSR832XVZ
DNase-seq ENCSR832XVZ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (86 years)"]
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| Id: | DNase-seq/ENCSR832XVZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR832XVZ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (86 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (86 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF608CVY|/files/ENCFF608CVY/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR832XVZ | float |
DNase-seq_ENCSR832XVZ |
DNase-seq ENCSR832XVZ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (86 years)"]
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[0.105, 11.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF951QLN.bed.gz | 452.25 KB | 355b645e374e6a8f7182b9d256d2658b |
| ENCFF951QLN.bed.gz.dvc | 100.0 B | cb2dfe3b9c530a521a868bd4dcbf8e3b |
| ENCFF951QLN.tabix.bed.gz | 407.35 KB | 0879cb4e785aaadcba236179e008e4e8 |
| ENCFF951QLN.tabix.bed.gz.dvc | 106.0 B | 9ef7580f39b0858dd0a13e9c71f152cd |
| ENCFF951QLN.tabix.bed.gz.tbi | 230.03 KB | 2458b1ed5c9146ce8a658feda545675b |
| ENCFF951QLN.tabix.bed.gz.tbi.dvc | 110.0 B | b8cffeacc9524a6c24fe18d14df20c2f |
| genomic_resource.yaml | 2.23 KB | c956a0d613d657d056feccb10ec972f5 |
| genomic_resource_original.yaml | 2.08 KB | 6bbccb2e349717649f145a777c0db1ce |
| statistics/ |