Resource

Id DNase-seq/ENCSR832THJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR832THJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours"]
Description
Labels
  • accession: ENCSR832THJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours
  • date_created: 2020-04-19T18:36:47.521569+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR832THJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR832THJ float

DNase-seq_ENCSR832THJ
DNase-seq ENCSR832THJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR832THJ [0.295, 51.8]
n
6,392,613
mean
7.7
sd
7.27

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 63926130.20% 31923
chr1 649548 0.26% 3254
chr2 446234 0.18% 2233
chr3 338947 0.17% 1657
chr4 214180 0.11% 1047
chr5 269724 0.15% 1329
chr6 372299 0.22% 1866
chr7 291871 0.18% 1471
chr8 229316 0.16% 1167
chr9 254635 0.18% 1279
chr10 271919 0.20% 1378
chr11 321043 0.24% 1621
chr12 338674 0.25% 1659
chr13 125118 0.11% 600
chr14 225105 0.21% 1117
chr15 202972 0.20% 1044
chr16 286446 0.32% 1409
chr17 406244 0.49% 2048
chr18 97663 0.12% 473
chr19 467421 0.80% 2286
chr20 179239 0.28% 930
chr21 69589 0.15% 363
chr22 158473 0.31% 810
chrX 175953 0.11% 882
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31923 5 860 200.25 200
global segment-length histogram

Files

Filename Size md5
ENCFF831NZD.bed.gz 350.89 KB 859373215bfe536c7fc8ac5a2730e869
ENCFF831NZD.tabix.bed.gz 318.39 KB 21a92a19bb148a00936fd9ad0dc1697e
ENCFF831NZD.tabix.bed.gz.tbi 170.91 KB 998352e1ef25197d24ae62fbfe98ddcd
genomic_resource.yaml 2.46 KB bd39b089dca88897c6360ab92b8a766a
statistics/