| Id: | DNase-seq/ENCSR832THJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR832THJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF839OPJ|/files/ENCFF839OPJ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27246412 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR832THJ | float |
DNase-seq_ENCSR832THJ |
DNase-seq ENCSR832THJ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-15 for 4 hours"]
|
 |
[0.295, 51.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF831NZD.bed.gz | 350.89 KB | 859373215bfe536c7fc8ac5a2730e869 |
| ENCFF831NZD.bed.gz.dvc | 100.0 B | 951f8e7e3a55cf9fc5d8f1176e37bf68 |
| ENCFF831NZD.tabix.bed.gz | 318.39 KB | 21a92a19bb148a00936fd9ad0dc1697e |
| ENCFF831NZD.tabix.bed.gz.dvc | 106.0 B | ba0e7ea9e74cd6103d5adc08c41a1735 |
| ENCFF831NZD.tabix.bed.gz.tbi | 170.91 KB | 998352e1ef25197d24ae62fbfe98ddcd |
| ENCFF831NZD.tabix.bed.gz.tbi.dvc | 110.0 B | 0d89a969e71593a83e35d4a91d39e68b |
| genomic_resource.yaml | 2.46 KB | bd39b089dca88897c6360ab92b8a766a |
| genomic_resource_original.yaml | 2.23 KB | ef4d129f78debfbc3c810a02b234198d |
| statistics/ |