Resource

Id DNase-seq/ENCSR832IQNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR832IQN [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years)"]
Description
Labels
  • accession: ENCSR832IQN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years)
  • date_created: 2018-11-30T18:43:55.350763+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR832IQN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (39 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR832IQN float

DNase-seq_ENCSR832IQN
DNase-seq ENCSR832IQN [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR832IQN [0.0621, 86.5]
n
19,680,065
mean
5.13
sd
9.54

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 196800650.61% 104875
chr1 1946782 0.78% 10356
chr2 1492253 0.62% 8004
chr3 1161456 0.59% 6191
chr4 774967 0.41% 4222
chr5 947258 0.52% 5075
chr6 1214041 0.71% 6389
chr7 928089 0.58% 5002
chr8 775728 0.53% 4186
chr9 790190 0.57% 4236
chr10 920845 0.69% 4913
chr11 979361 0.72% 5188
chr12 1025946 0.77% 5470
chr13 463288 0.41% 2491
chr14 720178 0.67% 3791
chr15 631102 0.62% 3393
chr16 708839 0.78% 3758
chr17 1038595 1.25% 5426
chr18 353276 0.44% 1898
chr19 967428 1.65% 4992
chr20 530067 0.82% 2870
chr21 234365 0.50% 1259
chr22 428936 0.84% 2284
chrX 614718 0.39% 3302
chrY 32357 0.06% 179
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 104875 4 920 187.65 180
global segment-length histogram

Files

Filename Size md5
ENCFF102CUO.bed.gz 1.15 MB 826f9c0f1c3ddb583a93922f916e58f7
ENCFF102CUO.tabix.bed.gz 1.05 MB 25f521c65599bb694984f355efa4fd5a
ENCFF102CUO.tabix.bed.gz.tbi 389.37 KB 31ae2591c419d9bc7bea60e0874ebf25
genomic_resource.yaml 1.27 KB b5f9f0a1965524275d67f2f7e63e8334
statistics/