DNase-seq_ENCSR829MXU
DNase-seq ENCSR829MXU [biosample_summary="Homo sapiens pons tissue male adult (78 years)"]
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| Id: | DNase-seq/ENCSR829MXU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR829MXU [biosample_summary="Homo sapiens pons tissue male adult (78 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (78 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF070ECN|/files/ENCFF070ECN/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR829MXU | float |
DNase-seq_ENCSR829MXU |
DNase-seq ENCSR829MXU [biosample_summary="Homo sapiens pons tissue male adult (78 years)"]
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[0.0303, 18.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF880TFT.bed.gz | 1.52 MB | b9653dcf6e5d739a6abc068c23eed28c |
| ENCFF880TFT.bed.gz.dvc | 101.0 B | 81f60a59177428437dd7cc064c678dd8 |
| ENCFF880TFT.tabix.bed.gz | 1.4 MB | bd75009b6b8121ea05c884424243fe96 |
| ENCFF880TFT.tabix.bed.gz.dvc | 107.0 B | b5c49fa0e96ba1ace5768f05b9db717c |
| ENCFF880TFT.tabix.bed.gz.tbi | 528.79 KB | 0f141df7ca54d3b863bdd89da1b9ed67 |
| ENCFF880TFT.tabix.bed.gz.tbi.dvc | 110.0 B | f34414f33caf4d2582af519849ef78c8 |
| genomic_resource.yaml | 2.01 KB | 29c281a1f0fe44184ef0f60dcce0c49d |
| genomic_resource_original.yaml | 1.92 KB | 0a2610ff79a5b0fb6e41477b3bdb3a41 |
| statistics/ |