Resource

Id DNase-seq/ENCSR829MXUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR829MXU [biosample_summary="Homo sapiens pons tissue male adult (78 years)"]
Description
Labels
  • accession: ENCSR829MXU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000988/
  • biosample_summary: Homo sapiens pons tissue male adult (78 years)
  • date_created: 2014-06-20T23:49:24.224682+00:00
  • date_released: 2016-05-09
  • doi: 10.17989/ENCSR829MXU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (78 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR829MXU float

DNase-seq_ENCSR829MXU
DNase-seq ENCSR829MXU [biosample_summary="Homo sapiens pons tissue male adult (78 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR829MXU [0.0303, 18.1]
n
31,058,179
mean
0.86
sd
0.933

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 310581790.97% 144176
chr1 2861204 1.15% 13130
chr2 2537220 1.05% 11787
chr3 2090233 1.05% 9628
chr4 1588848 0.84% 7372
chr5 1780743 0.98% 8201
chr6 1913891 1.12% 8691
chr7 1576352 0.99% 7463
chr8 1375047 0.95% 6434
chr9 1352132 0.98% 6293
chr10 1495660 1.12% 6938
chr11 1580692 1.17% 7336
chr12 1478264 1.11% 6835
chr13 884795 0.77% 4098
chr14 1013942 0.95% 4702
chr15 1006642 0.99% 4687
chr16 981143 1.09% 4604
chr17 1263803 1.52% 5892
chr18 725857 0.90% 3377
chr19 952021 1.62% 4402
chr20 778228 1.21% 3677
chr21 407462 0.87% 1838
chr22 523153 1.03% 2447
chrX 844557 0.54% 4109
chrY 46290 0.08% 235
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 144176 1 1080 215.42 202
global segment-length histogram

Files

Filename Size md5
ENCFF880TFT.bed.gz 1.52 MB b9653dcf6e5d739a6abc068c23eed28c
ENCFF880TFT.tabix.bed.gz 1.4 MB bd75009b6b8121ea05c884424243fe96
ENCFF880TFT.tabix.bed.gz.tbi 528.79 KB 0f141df7ca54d3b863bdd89da1b9ed67
genomic_resource.yaml 2.01 KB 29c281a1f0fe44184ef0f60dcce0c49d
statistics/