DNase-seq_ENCSR828RNY
DNase-seq ENCSR828RNY [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (108 days)"]
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| Id: | DNase-seq/ENCSR828RNY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR828RNY [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (108 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (108 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN928FPW|/analyses/ENCAN928FPW/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF664YWU|/files/ENCFF664YWU/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 31469964 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF822LXI|/files/ENCFF822LXI/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 31279996 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR828RNY | float |
DNase-seq_ENCSR828RNY |
DNase-seq ENCSR828RNY [biosample_summary="Homo sapiens renal cortex interstitium tissue male embryo (108 days)"]
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[3, 433] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF233MJO.bed.gz | 793.63 KB | 3eabd0c877764a9a39504c27581f832e |
| ENCFF233MJO.bed.gz.dvc | 100.0 B | 571b6c7551172492cbde01fada3776e6 |
| ENCFF233MJO.tabix.bed.gz | 681.08 KB | fa832e4a827728f991bbe3d1f95eba3e |
| ENCFF233MJO.tabix.bed.gz.dvc | 106.0 B | 31994199c9e876bd079cbdd4ad6a81d8 |
| ENCFF233MJO.tabix.bed.gz.tbi | 390.95 KB | c059b6b5e57142257615c60603f5255a |
| ENCFF233MJO.tabix.bed.gz.tbi.dvc | 110.0 B | 2130cfa12f28a3308cd3868a41d199c8 |
| genomic_resource.yaml | 2.64 KB | e41fd2715a5e56a216e4d7c9d4c769b4 |
| genomic_resource_original.yaml | 2.52 KB | 0ba14b5068ef06ee7792ee5a61c8f99d |
| statistics/ |