Resource

Id DNase-seq/ENCSR824YLDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR824YLD [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR824YLD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)
  • date_created: 2020-04-18T22:21:50.044419+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR824YLD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR824YLD float

DNase-seq_ENCSR824YLD
DNase-seq ENCSR824YLD [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (33 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR824YLD [0.174, 47.1]
n
7,648,194
mean
5.19
sd
5.46

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 76481940.24% 41372
chr1 774189 0.31% 4176
chr2 531410 0.22% 2878
chr3 425534 0.21% 2303
chr4 264269 0.14% 1415
chr5 339192 0.19% 1832
chr6 436785 0.26% 2365
chr7 348790 0.22% 1898
chr8 279975 0.19% 1529
chr9 304432 0.22% 1660
chr10 333634 0.25% 1830
chr11 398965 0.30% 2162
chr12 391525 0.29% 2129
chr13 161831 0.14% 859
chr14 275196 0.26% 1472
chr15 248473 0.24% 1379
chr16 310161 0.34% 1687
chr17 474212 0.57% 2550
chr18 114747 0.14% 633
chr19 517350 0.88% 2709
chr20 211992 0.33% 1173
chr21 92341 0.20% 493
chr22 182380 0.36% 1000
chrX 230688 0.15% 1239
chrY 123 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41372 5 780 184.86 180
global segment-length histogram

Files

Filename Size md5
ENCFF356KOD.bed.gz 458.64 KB 76c71802ff903d303d873da144f470c0
ENCFF356KOD.tabix.bed.gz 416.43 KB ba0345ecf8024d7acbe055b11f02d92f
ENCFF356KOD.tabix.bed.gz.tbi 213.23 KB 86ba1060822e36e0a8b794c7bf443106
genomic_resource.yaml 1.27 KB f80839045cfd0caba4be0f2f88daab72
statistics/