DNase-seq_ENCSR822GDF
DNase-seq ENCSR822GDF [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR822GDF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR822GDF [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF984AFR|/files/ENCFF984AFR/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR822GDF | float |
DNase-seq_ENCSR822GDF |
DNase-seq ENCSR822GDF [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0608, 20.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF691UUG.bed.gz | 920.89 KB | 52f356c201b69da60279b2026fc65492 |
| ENCFF691UUG.bed.gz.dvc | 100.0 B | f613361bda60f45d624063cd59738b7b |
| ENCFF691UUG.tabix.bed.gz | 833.52 KB | 1366d79b01a44ae4bd2deced58a99e1a |
| ENCFF691UUG.tabix.bed.gz.dvc | 106.0 B | c3c90bc5d2fdcfbee3a5e2999f42e5e2 |
| ENCFF691UUG.tabix.bed.gz.tbi | 370.76 KB | 3d5bf0cfb0066dce24eee199eed7abe6 |
| ENCFF691UUG.tabix.bed.gz.tbi.dvc | 110.0 B | 7cbd5a5d0617854073b40ca9c395b483 |
| genomic_resource.yaml | 2.12 KB | 6d66418e7b7b4bf5564caa67c06ecba3 |
| genomic_resource_original.yaml | 2.0 KB | 507a28a35b3dd966b70a2eeaf1064862 |
| statistics/ |