DNase-seq_ENCSR820XRX
DNase-seq ENCSR820XRX [biosample_summary="Homo sapiens brain tissue female embryo (105 days)"]
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| Id: | DNase-seq/ENCSR820XRX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR820XRX [biosample_summary="Homo sapiens brain tissue female embryo (105 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (105 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN513XIQ|/analyses/ENCAN513XIQ/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF343KQV|/files/ENCFF343KQV/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 39967113 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF424HKL|/files/ENCFF424HKL/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 39734188 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR820XRX | float |
DNase-seq_ENCSR820XRX |
DNase-seq ENCSR820XRX [biosample_summary="Homo sapiens brain tissue female embryo (105 days)"]
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[3, 1.73e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF693LCL.bed.gz | 1.29 MB | 3a5cbf5cb3cb9b3ac2672e0f8974f42a |
| ENCFF693LCL.bed.gz.dvc | 101.0 B | efae18ed4cabfaf12880c031bfddfed5 |
| ENCFF693LCL.tabix.bed.gz | 1.11 MB | fce338acc12b055aec52afc393d8d398 |
| ENCFF693LCL.tabix.bed.gz.dvc | 107.0 B | e0e5ae6ee10fbec61e4bbcd337464c38 |
| ENCFF693LCL.tabix.bed.gz.tbi | 604.89 KB | 64cd7dd400361fa78654cac0ef70cf53 |
| ENCFF693LCL.tabix.bed.gz.tbi.dvc | 110.0 B | aea066d8b8df441dcd972446e902714d |
| genomic_resource.yaml | 2.58 KB | 76038e835cee0451a3660389d1b6228f |
| genomic_resource_original.yaml | 2.49 KB | da1a7fd009b3ea71dbb400fb89f52db7 |
| statistics/ |