DNase-seq_ENCSR820WLP
DNase-seq ENCSR820WLP [biosample_summary="Homo sapiens dedifferentiated amniotic fluid mesenchymal stem cell male embryo (15 weeks)"]
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| Id: | DNase-seq/ENCSR820WLP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR820WLP [biosample_summary="Homo sapiens dedifferentiated amniotic fluid mesenchymal stem cell male embryo (15 weeks)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (15 weeks) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF833UTG|/files/ENCFF833UTG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.22. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF381FQU|/files/ENCFF381FQU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.18. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR820WLP | float |
DNase-seq_ENCSR820WLP |
DNase-seq ENCSR820WLP [biosample_summary="Homo sapiens dedifferentiated amniotic fluid mesenchymal stem cell male embryo (15 weeks)"]
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[0.0237, 9.69] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF070COX.bed.gz | 1.26 MB | 6df793484eace5e3ab93e1ad4032a683 |
| ENCFF070COX.bed.gz.dvc | 101.0 B | 844df7b36ac3a875c07e914c5160f6ef |
| ENCFF070COX.tabix.bed.gz | 1.15 MB | d40058d53df2496aca28dda0f1d08230 |
| ENCFF070COX.tabix.bed.gz.dvc | 107.0 B | ac80d5be8389a9b6a580953e1679c763 |
| ENCFF070COX.tabix.bed.gz.tbi | 459.95 KB | d123deccb5a7b9d30ad0ebab8bf6a43d |
| ENCFF070COX.tabix.bed.gz.tbi.dvc | 110.0 B | 62706a96699456fca2c9ad64621cede6 |
| genomic_resource.yaml | 2.96 KB | 498503f646148d3f2063be9a827516c1 |
| genomic_resource_original.yaml | 2.83 KB | 37cbe2d4137baaed7e789a3bbf413a04 |
| statistics/ |