DNase-seq_ENCSR820ICX
DNase-seq ENCSR820ICX [biosample_summary="Homo sapiens retina tissue female embryo (89 days)"]
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| Id: | DNase-seq/ENCSR820ICX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR820ICX [biosample_summary="Homo sapiens retina tissue female embryo (89 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (89 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF842NAE|/files/ENCFF842NAE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR820ICX | float |
DNase-seq_ENCSR820ICX |
DNase-seq ENCSR820ICX [biosample_summary="Homo sapiens retina tissue female embryo (89 days)"]
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[0.0211, 14] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF910DCV.bed.gz | 1.59 MB | fb99464aeeff337dc859d678d8c8da7b |
| ENCFF910DCV.bed.gz.dvc | 101.0 B | 137f9165e4c947211993b06758db6d08 |
| ENCFF910DCV.tabix.bed.gz | 1.48 MB | fe2408882d1cd73807308bbe51f6e898 |
| ENCFF910DCV.tabix.bed.gz.dvc | 107.0 B | 175c58a6adc36eb8c2646fd744653a59 |
| ENCFF910DCV.tabix.bed.gz.tbi | 549.41 KB | d7100fb048f2e1511e751adbfb5e4e47 |
| ENCFF910DCV.tabix.bed.gz.tbi.dvc | 110.0 B | 4d4ec0500670b9627ff94cc6f8af489d |
| genomic_resource.yaml | 2.03 KB | c5d2f9d4d4207b55634b41cdecaa7012 |
| genomic_resource_original.yaml | 1.93 KB | af68157921809d1be21f66db073ad4b8 |
| statistics/ |