Resource

Id DNase-seq/ENCSR819GAFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR819GAF [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR819GAF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2020-05-28T00:56:23.360962+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR819GAF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR819GAF float

DNase-seq_ENCSR819GAF
DNase-seq ENCSR819GAF [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR819GAF [0.0693, 30.1]
n
16,734,523
mean
2.13
sd
2.46

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 167345230.52% 93727
chr1 1567561 0.63% 8751
chr2 1362772 0.56% 7670
chr3 988086 0.50% 5549
chr4 626861 0.33% 3592
chr5 856606 0.47% 4898
chr6 851598 0.50% 4778
chr7 807141 0.51% 4604
chr8 753406 0.52% 4275
chr9 731539 0.53% 4082
chr10 824738 0.62% 4655
chr11 948807 0.70% 5252
chr12 793346 0.60% 4464
chr13 353709 0.31% 2047
chr14 518937 0.48% 2896
chr15 561283 0.55% 3152
chr16 658691 0.73% 3638
chr17 857841 1.03% 4719
chr18 313902 0.39% 1800
chr19 819944 1.40% 4323
chr20 518136 0.80% 2916
chr21 191967 0.41% 1074
chr22 448552 0.88% 2472
chrX 378645 0.24% 2116
chrY 455 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 93727 1 780 178.55 180
global segment-length histogram

Files

Filename Size md5
ENCFF981QFY.bed.gz 1.01 MB 2849fb5d573b109b174632c015058ccc
ENCFF981QFY.tabix.bed.gz 936.51 KB 85eb530cc75d610fc1b3ec0f9b7c5e76
ENCFF981QFY.tabix.bed.gz.tbi 385.36 KB 72d404840b5c336566d1be73791fd0f4
genomic_resource.yaml 1.49 KB 693a836e054a733ba637ce4169d28da5
statistics/