| Id: | DNase-seq/ENCSR819EPD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR819EPD [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF702OLB|/files/ENCFF702OLB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 26493772 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR819EPD | float |
DNase-seq_ENCSR819EPD |
DNase-seq ENCSR819EPD [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour"]
|
 |
[0.454, 40.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF290RGW.bed.gz | 351.72 KB | f2a99283dc9fbb9542513c8dfe590a76 |
| ENCFF290RGW.bed.gz.dvc | 100.0 B | 0a329525623eac1163a533063fef908a |
| ENCFF290RGW.tabix.bed.gz | 318.27 KB | 8b6871b52752fbb17ad11731706e9539 |
| ENCFF290RGW.tabix.bed.gz.dvc | 106.0 B | 1f3dd827916e4182c767a81d34ae0294 |
| ENCFF290RGW.tabix.bed.gz.tbi | 183.56 KB | d38d2fcfe427809e162619e394def20a |
| ENCFF290RGW.tabix.bed.gz.tbi.dvc | 110.0 B | cdb882a87d15b094cc60bd2354b1898b |
| genomic_resource.yaml | 2.45 KB | 80d01b3c1c733abcac47ee35f390b02c |
| genomic_resource_original.yaml | 2.22 KB | 05f70625be5d171e2e94d7a0bfe24d16 |
| statistics/ |