Resource

Id DNase-seq/ENCSR819EPDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR819EPD [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour"]
Description
Labels
  • accession: ENCSR819EPD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour
  • date_created: 2020-04-20T23:45:29.291749+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR819EPD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR819EPD float

DNase-seq_ENCSR819EPD
DNase-seq ENCSR819EPD [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR819EPD [0.454, 40.6]
n
5,898,857
mean
6.01
sd
5.01

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 58988570.18% 32292
chr1 613637 0.25% 3337
chr2 396420 0.16% 2167
chr3 316278 0.16% 1730
chr4 201714 0.11% 1091
chr5 260100 0.14% 1422
chr6 329629 0.19% 1821
chr7 265364 0.17% 1465
chr8 213114 0.15% 1217
chr9 237942 0.17% 1303
chr10 249191 0.19% 1384
chr11 301045 0.22% 1647
chr12 311584 0.23% 1686
chr13 116783 0.10% 649
chr14 207193 0.19% 1122
chr15 193412 0.19% 1058
chr16 252924 0.28% 1369
chr17 371083 0.45% 2031
chr18 87608 0.11% 489
chr19 437999 0.75% 2313
chr20 163764 0.25% 919
chr21 65927 0.14% 364
chr22 142563 0.28% 801
chrX 157689 0.10% 875
chrY 5894 0.01% 32
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32292 3 680 182.67 180
global segment-length histogram

Files

Filename Size md5
ENCFF290RGW.bed.gz 351.72 KB f2a99283dc9fbb9542513c8dfe590a76
ENCFF290RGW.tabix.bed.gz 318.27 KB 8b6871b52752fbb17ad11731706e9539
ENCFF290RGW.tabix.bed.gz.tbi 183.56 KB d38d2fcfe427809e162619e394def20a
genomic_resource.yaml 2.45 KB 80d01b3c1c733abcac47ee35f390b02c
statistics/