DNase-seq_ENCSR818HHN
DNase-seq ENCSR818HHN [biosample_summary="Homo sapiens osteocyte"]
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| Id: | DNase-seq/ENCSR818HHN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR818HHN [biosample_summary="Homo sapiens osteocyte"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (5 days) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF039RUP|/files/ENCFF039RUP/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.21. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR818HHN | float |
DNase-seq_ENCSR818HHN |
DNase-seq ENCSR818HHN [biosample_summary="Homo sapiens osteocyte"]
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[0.0274, 8.92] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF669XGP.bed.gz | 1.74 MB | 647e1d598cc5257215051755b6e98a38 |
| ENCFF669XGP.bed.gz.dvc | 101.0 B | 41ab958ea6138af15dd6fc544d93d819 |
| ENCFF669XGP.tabix.bed.gz | 1.68 MB | 6b57323a16b539b4f482e970081a0e0f |
| ENCFF669XGP.tabix.bed.gz.dvc | 107.0 B | ab856406daf8d3c5e43b273f77bd368b |
| ENCFF669XGP.tabix.bed.gz.tbi | 263.94 KB | a69b05180aa4298af1fd296d553d6ff1 |
| ENCFF669XGP.tabix.bed.gz.tbi.dvc | 110.0 B | 6bea4ac36de3fdcb6645a9166ad82436 |
| genomic_resource.yaml | 1.95 KB | 540ab1eb30d0d2eb5f7b6317d48daf37 |
| genomic_resource_original.yaml | 1.88 KB | 2e81344006e52d9642b87a9f2441705c |
| statistics/ |