Resource

Id DNase-seq/ENCSR817ALCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR817ALC [biosample_summary="Homo sapiens mammary epithelial cell female adult (19 years)"]
Description
Labels
  • accession: ENCSR817ALC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002327/
  • biosample_summary: Homo sapiens mammary epithelial cell female adult (19 years)
  • date_created: 2021-08-31T22:36:31.459305+00:00
  • date_released: 2022-03-12
  • doi: 10.17989/ENCSR817ALC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (19 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR817ALC float

DNase-seq_ENCSR817ALC

DNase-seq ENCSR817ALC [biosample_summary="Homo sapiens mammary epithelial cell female adult (19 years)"]
HISTOGRAM FOR DNase-seq_ENCSR817ALC [0.114, 10.9]
n
9,260,830
mean
1.75
sd
1.16

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 92608300.29% 43372
chr1 978875 0.39% 4407
chr2 674668 0.28% 3226
chr3 557750 0.28% 2587
chr4 368522 0.19% 1681
chr5 456471 0.25% 2136
chr6 527205 0.31% 2466
chr7 429111 0.27% 2044
chr8 368794 0.25% 1827
chr9 387078 0.28% 1844
chr10 414689 0.31% 2001
chr11 503176 0.37% 2393
chr12 473720 0.36% 2180
chr13 170719 0.15% 788
chr14 309462 0.29% 1413
chr15 302138 0.30% 1444
chr16 374799 0.41% 1744
chr17 518233 0.62% 2372
chr18 159765 0.20% 769
chr19 525469 0.90% 2312
chr20 257877 0.40% 1266
chr21 101095 0.22% 496
chr22 209457 0.41% 1014
chrX 191637 0.12% 961
chrY 120 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43372 1 980 213.52 200
global segment-length histogram

Files

Filename Size md5
ENCFF687TIG.bed.gz 463.17 KB 892d34357e5268cb5af8caf1f3c472a5
ENCFF687TIG.tabix.bed.gz 425.79 KB 44f620dbbc2caf5c43ffb19d0e9953fe
ENCFF687TIG.tabix.bed.gz.tbi 220.87 KB 5a8172bb9ad9dde9acc70549506f5877
genomic_resource.yaml 2.05 KB a6db97728b1d9f2b6820053735a4fa53
statistics/