DNase-seq_ENCSR817ALC
DNase-seq ENCSR817ALC [biosample_summary="Homo sapiens mammary epithelial cell female adult (19 years)"]
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| Id: | DNase-seq/ENCSR817ALC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR817ALC [biosample_summary="Homo sapiens mammary epithelial cell female adult (19 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (19 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF570RZQ|/files/ENCFF570RZQ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR817ALC | float |
DNase-seq_ENCSR817ALC |
DNase-seq ENCSR817ALC [biosample_summary="Homo sapiens mammary epithelial cell female adult (19 years)"]
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[0.114, 10.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF687TIG.bed.gz | 463.17 KB | 892d34357e5268cb5af8caf1f3c472a5 |
| ENCFF687TIG.bed.gz.dvc | 100.0 B | f001e555bf7e691676642d8fe4b27f42 |
| ENCFF687TIG.tabix.bed.gz | 425.79 KB | 44f620dbbc2caf5c43ffb19d0e9953fe |
| ENCFF687TIG.tabix.bed.gz.dvc | 106.0 B | df9d8cd68da5cb3dd2323af3615759ff |
| ENCFF687TIG.tabix.bed.gz.tbi | 220.87 KB | 5a8172bb9ad9dde9acc70549506f5877 |
| ENCFF687TIG.tabix.bed.gz.tbi.dvc | 110.0 B | 296085a392cc7bcb1e2bb26110d2c89b |
| genomic_resource.yaml | 2.05 KB | a6db97728b1d9f2b6820053735a4fa53 |
| genomic_resource_original.yaml | 1.94 KB | d2ed08963e995af4e835ab8aac43b139 |
| statistics/ |