DNase-seq_ENCSR814DYF
DNase-seq ENCSR814DYF [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue male adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR814DYF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR814DYF [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue male adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF580TLN|/files/ENCFF580TLN/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR814DYF | float |
DNase-seq_ENCSR814DYF |
DNase-seq ENCSR814DYF [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue male adult (90 or above years)"]
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[0.057, 20.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF856OGN.bed.gz | 1.06 MB | c98968e240d7342795d0f17877bd33fc |
| ENCFF856OGN.bed.gz.dvc | 101.0 B | 7a53a25bfdfb45c05ab49d52ebef392e |
| ENCFF856OGN.tabix.bed.gz | 984.95 KB | 2ec1e74b885b3a1e3d627a47707529ba |
| ENCFF856OGN.tabix.bed.gz.dvc | 107.0 B | 159226700ea592624d44d27ef37990d9 |
| ENCFF856OGN.tabix.bed.gz.tbi | 420.86 KB | 009b542ab2ad336e2913790defbc1554 |
| ENCFF856OGN.tabix.bed.gz.tbi.dvc | 110.0 B | 4db7c681769c6c621dea153029c68fc8 |
| genomic_resource.yaml | 2.26 KB | dcd95abb76124582c97aa77bf3ca2e7b |
| genomic_resource_original.yaml | 2.11 KB | 1508464e3da89a5e9d75af2c3c262b43 |
| statistics/ |