Resource

Id DNase-seq/ENCSR813CKUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR813CKU [biosample_summary="Homo sapiens urinary bladder tissue male embryo (76 days)"]
Description
Labels
  • accession: ENCSR813CKU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001255/
  • biosample_summary: Homo sapiens urinary bladder tissue male embryo (76 days)
  • date_created: 2014-06-20T23:49:24.525759+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR813CKU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (76 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR813CKU float

DNase-seq_ENCSR813CKU
DNase-seq ENCSR813CKU [biosample_summary="Homo sapiens urinary bladder tissue male embryo (76 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR813CKU [7, 3.98e+03]
n
13,477,161
mean
60.3
sd
60.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 134771610.42% 89551
chr1 1248449 0.50% 8297
chr2 1101216 0.45% 7320
chr3 861745 0.43% 5723
chr4 707760 0.37% 4705
chr5 760155 0.42% 5045
chr6 832663 0.49% 5530
chr7 688220 0.43% 4570
chr8 639245 0.44% 4247
chr9 588803 0.43% 3908
chr10 674229 0.50% 4478
chr11 679798 0.50% 4522
chr12 685977 0.51% 4558
chr13 372398 0.33% 2474
chr14 428299 0.40% 2849
chr15 413198 0.41% 2746
chr16 416815 0.46% 2773
chr17 537882 0.65% 3574
chr18 305797 0.38% 2033
chr19 444130 0.76% 2955
chr20 346780 0.54% 2309
chr21 160531 0.34% 1069
chr22 229088 0.45% 1523
chrX 338983 0.22% 2243
chrY 15000 0.03% 100
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 89551 15 450 150.5 150
global segment-length histogram

Files

Filename Size md5
ENCFF329BDX.bed.gz 872.63 KB ee5cfa4be7b5dd5bde6731fa282222ce
ENCFF329BDX.tabix.bed.gz 746.56 KB 19f10a5248c67990eb285304bba6cb34
ENCFF329BDX.tabix.bed.gz.tbi 425.27 KB eb541df99d9455cf02d1af71f46611c6
genomic_resource.yaml 2.2 KB 3124824282a4945db204563d81958260
statistics/