DNase-seq_ENCSR813CKU
DNase-seq ENCSR813CKU [biosample_summary="Homo sapiens urinary bladder tissue male embryo (76 days)"]
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| Id: | DNase-seq/ENCSR813CKU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR813CKU [biosample_summary="Homo sapiens urinary bladder tissue male embryo (76 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (76 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN566NZT|/analyses/ENCAN566NZT/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF869HKR|/files/ENCFF869HKR/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR813CKU | float |
DNase-seq_ENCSR813CKU |
DNase-seq ENCSR813CKU [biosample_summary="Homo sapiens urinary bladder tissue male embryo (76 days)"]
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[7, 3.98e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF329BDX.bed.gz | 872.63 KB | ee5cfa4be7b5dd5bde6731fa282222ce |
| ENCFF329BDX.bed.gz.dvc | 100.0 B | 314463ed40bf4811bd04208c3edbf304 |
| ENCFF329BDX.tabix.bed.gz | 746.56 KB | 19f10a5248c67990eb285304bba6cb34 |
| ENCFF329BDX.tabix.bed.gz.dvc | 106.0 B | 28b9a3bcdf91c2fdd941c4fa0d6363f9 |
| ENCFF329BDX.tabix.bed.gz.tbi | 425.27 KB | eb541df99d9455cf02d1af71f46611c6 |
| ENCFF329BDX.tabix.bed.gz.tbi.dvc | 110.0 B | 59d805c8ead67fe2c17562dda6fb6664 |
| genomic_resource.yaml | 2.2 KB | 3124824282a4945db204563d81958260 |
| genomic_resource_original.yaml | 2.1 KB | 1cb8ade32cac4ee4e8d66ee054190795 |
| statistics/ |