Resource
| Id | DNase-seq/ENCSR811OUF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR811OUF [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (86 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (86 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF507QWT|/files/ENCFF507QWT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR811OUF | float |
DNase-seq_ENCSR811OUF |
DNase-seq ENCSR811OUF [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (86 years)"]
|
 |
[0.0865, 18.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9920228 | 0.31% | 53666 |
| chr1 | 911056 | 0.37% | 4977 |
| chr2 | 792411 | 0.33% | 4294 |
| chr3 | 537057 | 0.27% | 2952 |
| chr4 | 379533 | 0.20% | 2053 |
| chr5 | 473955 | 0.26% | 2582 |
| chr6 | 478401 | 0.28% | 2620 |
| chr7 | 470665 | 0.30% | 2564 |
| chr8 | 447570 | 0.31% | 2431 |
| chr9 | 479628 | 0.35% | 2572 |
| chr10 | 486910 | 0.36% | 2650 |
| chr11 | 560188 | 0.41% | 3034 |
| chr12 | 456253 | 0.34% | 2441 |
| chr13 | 212594 | 0.19% | 1151 |
| chr14 | 331347 | 0.31% | 1780 |
| chr15 | 331630 | 0.33% | 1794 |
| chr16 | 363736 | 0.40% | 1956 |
| chr17 | 511002 | 0.61% | 2767 |
| chr18 | 184041 | 0.23% | 1038 |
| chr19 | 534522 | 0.91% | 2744 |
| chr20 | 298258 | 0.46% | 1598 |
| chr21 | 138172 | 0.30% | 748 |
| chr22 | 294694 | 0.58% | 1576 |
| chrX | 236180 | 0.15% | 1286 |
| chrY | 10425 | 0.02% | 58 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 53666 | 4 | 1000 | 184.85 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF750SYW.bed.gz | 589.45 KB | ed2e4fd74fa4de337c718a7e2bf22445 |
| ENCFF750SYW.tabix.bed.gz | 535.8 KB | 67dd5b1cdf6d187268cb4b848e3f5e16 |
| ENCFF750SYW.tabix.bed.gz.tbi | 249.57 KB | 9f49b2c3bd7c163ce9bdc6aafe9260bf |
| genomic_resource.yaml | 2.09 KB | c565f12e75ca658154d5e5bb88f1bf57 |
| statistics/ |