DNase-seq_ENCSR810CTB
DNase-seq ENCSR810CTB [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"]
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| Id: | DNase-seq/ENCSR810CTB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR810CTB [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF361ZOQ|/files/ENCFF361ZOQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 48046934 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR810CTB | float |
DNase-seq_ENCSR810CTB |
DNase-seq ENCSR810CTB [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"]
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[0.251, 32.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF619VKT.bed.gz | 543.24 KB | 7c1c3040c7faee76638be3133b8700e7 |
| ENCFF619VKT.bed.gz.dvc | 100.0 B | b94bf683ef2dd43e2bc51f46b0a9a45d |
| ENCFF619VKT.tabix.bed.gz | 492.8 KB | 2451b5df7c82df3e96272a3c3db4a4b8 |
| ENCFF619VKT.tabix.bed.gz.dvc | 106.0 B | 99fff92f81f07eb2876cfee7d4864b81 |
| ENCFF619VKT.tabix.bed.gz.tbi | 247.9 KB | c4f9fdd5da2676d2d854e44381be1289 |
| ENCFF619VKT.tabix.bed.gz.tbi.dvc | 110.0 B | 7fa46efd8eccd37f77fdd00f520c4a6e |
| genomic_resource.yaml | 2.14 KB | d43e1575b412c237bd95fe374d7217ab |
| genomic_resource_original.yaml | 1.99 KB | 422b90c49ef72fbf9caf4ba62f08153d |
| statistics/ |