DNase-seq_ENCSR809CEA
DNase-seq ENCSR809CEA [biosample_summary="Homo sapiens H4"]
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| Id: | DNase-seq/ENCSR809CEA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR809CEA [biosample_summary="Homo sapiens H4"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF522QNO|/files/ENCFF522QNO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF224DKF|/files/ENCFF224DKF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.26. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR809CEA | float |
DNase-seq_ENCSR809CEA |
DNase-seq ENCSR809CEA [biosample_summary="Homo sapiens H4"]
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[0.0229, 24.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF299PRU.bed.gz | 1.5 MB | f61d39db331eadc7d12e5b7ba1c8e3f8 |
| ENCFF299PRU.bed.gz.dvc | 101.0 B | 9b27dd560cae7bd95f62a5d06de3ed00 |
| ENCFF299PRU.tabix.bed.gz | 1.37 MB | 42c28a8dfceefdb298666fa012941207 |
| ENCFF299PRU.tabix.bed.gz.dvc | 107.0 B | 1fb37daa4da6d24dffed35c9b7b6ee2b |
| ENCFF299PRU.tabix.bed.gz.tbi | 551.72 KB | ca2ab42aabcf7c576e979aef68f019d6 |
| ENCFF299PRU.tabix.bed.gz.tbi.dvc | 110.0 B | 02c8af1045c3a134c6f78c8c2be9d4fe |
| genomic_resource.yaml | 2.75 KB | a16c5d0f56aa99eb74d8a9c75567ca04 |
| genomic_resource_original.yaml | 2.69 KB | 87388d5f7974a03ddc8757713b807d5c |
| statistics/ |