DNase-seq_ENCSR805RJA
DNase-seq ENCSR805RJA [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR805RJA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR805RJA [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF120BYB|/files/ENCFF120BYB/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR805RJA | float |
DNase-seq_ENCSR805RJA |
DNase-seq ENCSR805RJA [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0655, 17.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF712KXT.bed.gz | 658.2 KB | 5fee5fa1981fba8d89ca0a01587c9913 |
| ENCFF712KXT.bed.gz.dvc | 100.0 B | f59d99c2ce86b12f6c75a5470efa18dc |
| ENCFF712KXT.tabix.bed.gz | 599.33 KB | d46c4a5b7fa7ff1e621ab85f650dc146 |
| ENCFF712KXT.tabix.bed.gz.dvc | 106.0 B | 398b92a6bb19f255b98d78795eee8261 |
| ENCFF712KXT.tabix.bed.gz.tbi | 283.23 KB | fecb4b93405aec4e95620e4921bd6800 |
| ENCFF712KXT.tabix.bed.gz.tbi.dvc | 110.0 B | 6733b2d6b01e2b9149792e31203d2e96 |
| genomic_resource.yaml | 2.27 KB | 34c4272750d2f0870a227c3f922c5a5a |
| genomic_resource_original.yaml | 2.11 KB | b3c13c3a5e63878400ccc4c435f87c77 |
| statistics/ |