Resource
| Id | DNase-seq/ENCSR805EGZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR805EGZ [biosample_summary="Homo sapiens heart left ventricle tissue female adult (56 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (56 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF221NLC|/files/ENCFF221NLC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR805EGZ | float |
DNase-seq_ENCSR805EGZ |
DNase-seq ENCSR805EGZ [biosample_summary="Homo sapiens heart left ventricle tissue female adult (56 years)"]
|
 |
[0.0881, 15.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11095774 | 0.34% | 59488 |
| chr1 | 1095585 | 0.44% | 5926 |
| chr2 | 784990 | 0.32% | 4244 |
| chr3 | 642759 | 0.32% | 3469 |
| chr4 | 392785 | 0.21% | 2101 |
| chr5 | 517590 | 0.29% | 2803 |
| chr6 | 620869 | 0.36% | 3332 |
| chr7 | 525994 | 0.33% | 2857 |
| chr8 | 424494 | 0.29% | 2299 |
| chr9 | 462835 | 0.33% | 2478 |
| chr10 | 513939 | 0.38% | 2790 |
| chr11 | 589226 | 0.44% | 3129 |
| chr12 | 578736 | 0.43% | 3075 |
| chr13 | 216144 | 0.19% | 1133 |
| chr14 | 363743 | 0.34% | 1959 |
| chr15 | 376868 | 0.37% | 2028 |
| chr16 | 449889 | 0.50% | 2414 |
| chr17 | 664570 | 0.80% | 3493 |
| chr18 | 177659 | 0.22% | 996 |
| chr19 | 689596 | 1.18% | 3484 |
| chr20 | 326926 | 0.51% | 1798 |
| chr21 | 134825 | 0.29% | 730 |
| chr22 | 270079 | 0.53% | 1464 |
| chrX | 275272 | 0.18% | 1483 |
| chrY | 401 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 59488 | 1 | 940 | 186.52 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF770BCH.bed.gz | 653.73 KB | dc3bc699eb71274206e1fa0b0cd18746 |
| ENCFF770BCH.tabix.bed.gz | 593.44 KB | 6371f5bf6f15316a0ffd4bf2f7fdd7d3 |
| ENCFF770BCH.tabix.bed.gz.tbi | 269.72 KB | 57730a822ab5100eb9ecdce44c2ce106 |
| genomic_resource.yaml | 2.07 KB | b7d99dce82e3b9aba0dab473750b53ef |
| statistics/ |