Resource

Id DNase-seq/ENCSR803JVQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR803JVQ [biosample_summary="Homo sapiens T-cell male adult (34 years)"]
Description
Labels
  • accession: ENCSR803JVQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (34 years)
  • date_created: 2020-04-12T19:00:09.262967+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR803JVQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (34 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR803JVQ float

DNase-seq_ENCSR803JVQ

DNase-seq ENCSR803JVQ [biosample_summary="Homo sapiens T-cell male adult (34 years)"]
HISTOGRAM FOR DNase-seq_ENCSR803JVQ [0.139, 99.2]
n
8,647,288
mean
8.01
sd
11.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 86472880.27% 45147
chr1 870095 0.35% 4560
chr2 598000 0.25% 3148
chr3 476972 0.24% 2492
chr4 298019 0.16% 1552
chr5 381692 0.21% 2006
chr6 508900 0.30% 2648
chr7 399977 0.25% 2100
chr8 317212 0.22% 1645
chr9 345294 0.25% 1821
chr10 382108 0.29% 2005
chr11 440322 0.33% 2318
chr12 436910 0.33% 2291
chr13 178130 0.16% 924
chr14 305452 0.29% 1592
chr15 275184 0.27% 1450
chr16 353689 0.39% 1838
chr17 530318 0.64% 2763
chr18 141512 0.18% 743
chr19 572134 0.98% 2876
chr20 242802 0.38% 1288
chr21 111677 0.24% 571
chr22 212412 0.42% 1120
chrX 257745 0.17% 1342
chrY 10732 0.02% 54
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45147 1 1020 191.54 191
global segment-length histogram

Files

Filename Size md5
ENCFF151TWM.bed.gz 508.13 KB 24fccdb0f10cf74636c9862e47839612
ENCFF151TWM.tabix.bed.gz 461.77 KB 2f7fe5499dbfdd88e93af5f9673f62d9
ENCFF151TWM.tabix.bed.gz.tbi 225.16 KB 9eb83eef68219bbf3279af9588284a17
genomic_resource.yaml 1.18 KB 5096af7359173fd764734fc48d191c5a
statistics/