DNase-seq_ENCSR802ZYE
DNase-seq ENCSR802ZYE [biosample_summary="Homo sapiens left lobe of liver tissue male adult (45 years)"]
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| Id: | DNase-seq/ENCSR802ZYE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR802ZYE [biosample_summary="Homo sapiens left lobe of liver tissue male adult (45 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (45 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF272CBV|/files/ENCFF272CBV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR802ZYE | float |
DNase-seq_ENCSR802ZYE |
DNase-seq ENCSR802ZYE [biosample_summary="Homo sapiens left lobe of liver tissue male adult (45 years)"]
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[0.0307, 16.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF644RPH.bed.gz | 1.44 MB | 6e33e46da22fd0d9cd1e474a72c8fa1f |
| ENCFF644RPH.bed.gz.dvc | 101.0 B | 3feb8d78c645c45e1e6b424fc833e5f7 |
| ENCFF644RPH.tabix.bed.gz | 1.34 MB | 4f6fc40cfc1dac47ccae266576d48968 |
| ENCFF644RPH.tabix.bed.gz.dvc | 107.0 B | 328f40803b912c1e739b3d8caada5aa6 |
| ENCFF644RPH.tabix.bed.gz.tbi | 337.1 KB | 87cabf453a43d10054bb303e1dc52950 |
| ENCFF644RPH.tabix.bed.gz.tbi.dvc | 110.0 B | 00ea71df838b04bda1836921c004fe94 |
| genomic_resource.yaml | 2.05 KB | 325f5650276100395c06ccac982df3ee |
| genomic_resource_original.yaml | 1.95 KB | 5d7cec3b781616d3311f1de08d6758b4 |
| statistics/ |