Resource

Id DNase-seq/ENCSR801VSKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR801VSK [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 100 ng/mL Interleukin-4 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours"]
Description
Labels
  • accession: ENCSR801VSK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 100 ng/mL Interleukin-4 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours
  • date_created: 2018-11-30T18:43:54.889291+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR801VSK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (37 years) treated with 100 ng/mL Interleukin-4 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours
  • status: released
  • submitter_comment: The experiment biosample had only one associated treatment Interleukin-4 (UniProtKB:P05112) for 8 hours. Treatments anti-CD3 and anti-CD28 coated beads for 16 hours & 50 U/mL Interleukin-2 (UniProtKB:P60568) for 16 hours have been added to the biosample on 11/04/21.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR801VSK float

DNase-seq_ENCSR801VSK
DNase-seq ENCSR801VSK [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 100 ng/mL Interleukin-4 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR801VSK [0.0955, 19.5]
n
19,465,144
mean
2.2
sd
2.56

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 194651440.61% 102128
chr1 1877596 0.75% 9855
chr2 1514270 0.63% 7940
chr3 1264945 0.64% 6624
chr4 824686 0.43% 4413
chr5 977791 0.54% 5170
chr6 1269272 0.74% 6530
chr7 936519 0.59% 4952
chr8 857742 0.59% 4522
chr9 787208 0.57% 4144
chr10 933885 0.70% 4920
chr11 924696 0.68% 4882
chr12 1000318 0.75% 5159
chr13 455306 0.40% 2398
chr14 672063 0.63% 3535
chr15 639571 0.63% 3381
chr16 679727 0.75% 3528
chr17 944012 1.13% 4885
chr18 370583 0.46% 1980
chr19 816300 1.39% 4157
chr20 505801 0.78% 2704
chr21 221863 0.47% 1171
chr22 375570 0.74% 1973
chrX 615169 0.39% 3303
chrY 251 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 102128 1 920 190.6 180
global segment-length histogram

Files

Filename Size md5
ENCFF991ONF.bed.gz 1.09 MB b3883c523193bdffcd9109262456bf35
ENCFF991ONF.tabix.bed.gz 1014.79 KB 8a7f29ba40b9c0ec3af1970da5665776
ENCFF991ONF.tabix.bed.gz.tbi 413.76 KB 012ebb88860895084f39691c61d94b51
genomic_resource.yaml 3.08 KB 203fca9662701632ad9ba014dcba1550
statistics/