| Id: | DNase-seq/ENCSR801VSK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR801VSK [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 100 ng/mL Interleukin-4 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (37 years) treated with 100 ng/mL Interleukin-4 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF220ACX|/files/ENCFF220ACX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR801VSK | float |
DNase-seq_ENCSR801VSK |
DNase-seq ENCSR801VSK [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell female adult (37 years) treated with 100 ng/mL Interleukin-4 for 8 hours, 50 U/mL Interleukin-2 for 16 hours, anti-CD3 and anti-CD28 coated beads for 16 hours"]
|
 |
[0.0955, 19.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF991ONF.bed.gz | 1.09 MB | b3883c523193bdffcd9109262456bf35 |
| ENCFF991ONF.bed.gz.dvc | 101.0 B | a0aea02477edeb171480ddf3722362f0 |
| ENCFF991ONF.tabix.bed.gz | 1014.79 KB | 8a7f29ba40b9c0ec3af1970da5665776 |
| ENCFF991ONF.tabix.bed.gz.dvc | 107.0 B | 9760d6f026979606a093b23e25a23b8b |
| ENCFF991ONF.tabix.bed.gz.tbi | 413.76 KB | 012ebb88860895084f39691c61d94b51 |
| ENCFF991ONF.tabix.bed.gz.tbi.dvc | 110.0 B | 1f6833cd2e41eb12ce5a7e447f935f36 |
| genomic_resource.yaml | 3.08 KB | 203fca9662701632ad9ba014dcba1550 |
| genomic_resource_original.yaml | 2.83 KB | 2b7538cecb8b8cf4906d56b278a610f9 |
| statistics/ |