Resource
| Id | DNase-seq/ENCSR800MBE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR800MBE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (82 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (82 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF990EJE|/files/ENCFF990EJE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR800MBE | float |
DNase-seq_ENCSR800MBE |
DNase-seq ENCSR800MBE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (82 years)"]
|
 |
[0.0794, 8.95] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10615584 | 0.33% | 55083 |
| chr1 | 923683 | 0.37% | 4822 |
| chr2 | 1026264 | 0.42% | 5286 |
| chr3 | 498127 | 0.25% | 2609 |
| chr4 | 360126 | 0.19% | 1827 |
| chr5 | 519096 | 0.29% | 2718 |
| chr6 | 442266 | 0.26% | 2321 |
| chr7 | 522928 | 0.33% | 2691 |
| chr8 | 508551 | 0.35% | 2621 |
| chr9 | 463278 | 0.33% | 2430 |
| chr10 | 620671 | 0.46% | 3270 |
| chr11 | 591414 | 0.44% | 3057 |
| chr12 | 411875 | 0.31% | 2158 |
| chr13 | 197403 | 0.17% | 1035 |
| chr14 | 352594 | 0.33% | 1796 |
| chr15 | 334008 | 0.33% | 1794 |
| chr16 | 406699 | 0.45% | 2154 |
| chr17 | 551134 | 0.66% | 2898 |
| chr18 | 186308 | 0.23% | 982 |
| chr19 | 512734 | 0.87% | 2567 |
| chr20 | 331964 | 0.52% | 1782 |
| chr21 | 185183 | 0.40% | 919 |
| chr22 | 469790 | 0.92% | 2314 |
| chrX | 198902 | 0.13% | 1027 |
| chrY | 586 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 55083 | 1 | 980 | 192.72 | 184 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF433LZG.bed.gz | 569.6 KB | 6ccd30ad559c7e449d099a3f9c7040db |
| ENCFF433LZG.tabix.bed.gz | 523.18 KB | 9a0c4102b27ef3028d8dbd6d0111f246 |
| ENCFF433LZG.tabix.bed.gz.tbi | 187.91 KB | 8a437791c2611b8d264ea40b6ec1787a |
| genomic_resource.yaml | 2.09 KB | 3d435a5f9affd057dd860787e7d4d210 |
| statistics/ |