DNase-seq_ENCSR800MBE
DNase-seq ENCSR800MBE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (82 years)"]
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| Id: | DNase-seq/ENCSR800MBE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR800MBE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (82 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (82 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF990EJE|/files/ENCFF990EJE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR800MBE | float |
DNase-seq_ENCSR800MBE |
DNase-seq ENCSR800MBE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (82 years)"]
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[0.0794, 8.95] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF433LZG.bed.gz | 569.6 KB | 6ccd30ad559c7e449d099a3f9c7040db |
| ENCFF433LZG.bed.gz.dvc | 100.0 B | 63c5e68ec65edcd60e58c86240bb436c |
| ENCFF433LZG.tabix.bed.gz | 523.18 KB | 9a0c4102b27ef3028d8dbd6d0111f246 |
| ENCFF433LZG.tabix.bed.gz.dvc | 106.0 B | 1f7535ca9c1ddd74a4d8d8e29d1f9048 |
| ENCFF433LZG.tabix.bed.gz.tbi | 187.91 KB | 8a437791c2611b8d264ea40b6ec1787a |
| ENCFF433LZG.tabix.bed.gz.tbi.dvc | 110.0 B | 034d9804bf03eba626b9707b79243867 |
| genomic_resource.yaml | 2.09 KB | 3d435a5f9affd057dd860787e7d4d210 |
| genomic_resource_original.yaml | 1.97 KB | bf8c89c0213f207897fd8b32ca497edc |
| statistics/ |