DNase-seq_ENCSR800KVI
DNase-seq ENCSR800KVI [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (84 years)"]
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| Id: | DNase-seq/ENCSR800KVI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR800KVI [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (84 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (84 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF306XXE|/files/ENCFF306XXE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR800KVI | float |
DNase-seq_ENCSR800KVI |
DNase-seq ENCSR800KVI [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (84 years)"]
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[0.0756, 11.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF328UXU.bed.gz | 551.52 KB | 95a185b99cf4475192ce4db8fe75e396 |
| ENCFF328UXU.bed.gz.dvc | 100.0 B | 8ad18b556f439c00c234d4a89c8e3083 |
| ENCFF328UXU.tabix.bed.gz | 510.15 KB | a34df5e27a907b056d806401313e0c8c |
| ENCFF328UXU.tabix.bed.gz.dvc | 106.0 B | 06a8f8ac8fb50bc4e878feee44095949 |
| ENCFF328UXU.tabix.bed.gz.tbi | 179.2 KB | aeb38b576973e196d2a401d527695532 |
| ENCFF328UXU.tabix.bed.gz.tbi.dvc | 110.0 B | a32a0638773ef23f09a9bb8793ba5ccb |
| genomic_resource.yaml | 2.1 KB | 321ac374cb46ba7b49948ed477433b1e |
| genomic_resource_original.yaml | 1.98 KB | 5d12f4048dd38f766d3d3b06d0cdb173 |
| statistics/ |