DNase-seq_ENCSR800ADR
DNase-seq ENCSR800ADR [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (61 years)"]
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| Id: | DNase-seq/ENCSR800ADR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR800ADR [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (61 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (61 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF467XLG|/files/ENCFF467XLG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR800ADR | float |
DNase-seq_ENCSR800ADR |
DNase-seq ENCSR800ADR [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (61 years)"]
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[0.0418, 26.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF169ADV.bed.gz | 1.33 MB | 587a400922279e1f0a415c7e1f1361fc |
| ENCFF169ADV.bed.gz.dvc | 101.0 B | b67b6e9bd931e161c9ab544231d93905 |
| ENCFF169ADV.tabix.bed.gz | 1.24 MB | 4d656c9003b15b6089e72712bf4e31d6 |
| ENCFF169ADV.tabix.bed.gz.dvc | 107.0 B | b647b56701421c27c959d5d3efc1c1d1 |
| ENCFF169ADV.tabix.bed.gz.tbi | 292.43 KB | 9dee4aa4cdbd3e7b13d609d7f3c4dc48 |
| ENCFF169ADV.tabix.bed.gz.tbi.dvc | 110.0 B | 2468eb009e2ae6f86bf8293a6e84cf31 |
| genomic_resource.yaml | 2.08 KB | 7c6292fab08b270b5d6eb7e08670c4cf |
| genomic_resource_original.yaml | 1.97 KB | 06a2ec5147a2cf7276555522d8ea66f9 |
| statistics/ |