Resource

Id DNase-seq/ENCSR799MAXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR799MAX [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours"]
Description
Labels
  • accession: ENCSR799MAX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours
  • date_created: 2020-04-19T18:36:53.357577+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR799MAX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR799MAX float

DNase-seq_ENCSR799MAX
DNase-seq ENCSR799MAX [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR799MAX [0.291, 54.3]
n
8,913,720
mean
6.6
sd
6.63

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 89137200.28% 49378
chr1 900561 0.36% 4970
chr2 629985 0.26% 3487
chr3 508785 0.26% 2799
chr4 324955 0.17% 1812
chr5 398542 0.22% 2223
chr6 515401 0.30% 2859
chr7 405342 0.25% 2255
chr8 336513 0.23% 1883
chr9 371597 0.27% 2057
chr10 394551 0.29% 2197
chr11 449534 0.33% 2517
chr12 466191 0.35% 2542
chr13 179771 0.16% 998
chr14 309305 0.29% 1711
chr15 291493 0.29% 1646
chr16 372692 0.41% 2033
chr17 524161 0.63% 2894
chr18 146215 0.18% 824
chr19 576440 0.98% 3087
chr20 246231 0.38% 1409
chr21 102781 0.22% 578
chr22 216336 0.43% 1207
chrX 238165 0.15% 1345
chrY 8173 0.01% 45
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49378 14 728 180.52 180
global segment-length histogram

Files

Filename Size md5
ENCFF387DKT.bed.gz 537.93 KB 6a4d5bc4d86845e79f0c5b197f044694
ENCFF387DKT.tabix.bed.gz 485.2 KB a001a1a8bc4967c042786623a06c8dfe
ENCFF387DKT.tabix.bed.gz.tbi 245.77 KB f6b8ad78b30bcccb91cc424f4398bbc4
genomic_resource.yaml 2.65 KB 50d30770747f9f6aa84a559cc648b186
statistics/