| Id: | DNase-seq/ENCSR799MAX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR799MAX [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF965IXQ|/files/ENCFF965IXQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 27542482 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR799MAX | float |
DNase-seq_ENCSR799MAX |
DNase-seq ENCSR799MAX [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-23 for 24 hours, 100 ng/mL Interleukin-1b for 24 hours"]
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[0.291, 54.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF387DKT.bed.gz | 537.93 KB | 6a4d5bc4d86845e79f0c5b197f044694 |
| ENCFF387DKT.bed.gz.dvc | 100.0 B | fa19ce8134b1b6b8d38fc3866a5c6c68 |
| ENCFF387DKT.tabix.bed.gz | 485.2 KB | a001a1a8bc4967c042786623a06c8dfe |
| ENCFF387DKT.tabix.bed.gz.dvc | 106.0 B | 782ea11cdd53d9677a9a71d59982b1f3 |
| ENCFF387DKT.tabix.bed.gz.tbi | 245.77 KB | f6b8ad78b30bcccb91cc424f4398bbc4 |
| ENCFF387DKT.tabix.bed.gz.tbi.dvc | 110.0 B | 3a220164f42f21a2a78c2b659748a793 |
| genomic_resource.yaml | 2.65 KB | 50d30770747f9f6aa84a559cc648b186 |
| genomic_resource_original.yaml | 2.39 KB | 64198a9ecae4264c4b20600a7e8ce47e |
| statistics/ |