Resource

Id DNase-seq/ENCSR798XLOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR798XLO [biosample_summary="Homo sapiens ovary tissue female adult (46 years)"]
Description
Labels
  • accession: ENCSR798XLO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (46 years)
  • date_created: 2019-11-01T20:44:45.094837+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR798XLO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (46 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR798XLO float

DNase-seq_ENCSR798XLO

DNase-seq ENCSR798XLO [biosample_summary="Homo sapiens ovary tissue female adult (46 years)"]
HISTOGRAM FOR DNase-seq_ENCSR798XLO [0.0341, 49.6]
n
22,794,304
mean
2.1
sd
3.01

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 227943040.71% 100592
chr1 2123370 0.85% 9184
chr2 1752769 0.72% 7794
chr3 1136614 0.57% 5163
chr4 796983 0.42% 3551
chr5 959326 0.53% 4302
chr6 1024460 0.60% 4642
chr7 1019894 0.64% 4642
chr8 935591 0.64% 4195
chr9 1144440 0.83% 4986
chr10 1093646 0.82% 4925
chr11 1334267 0.99% 5812
chr12 997633 0.75% 4453
chr13 390908 0.34% 1808
chr14 739169 0.69% 3210
chr15 743706 0.73% 3327
chr16 1015088 1.12% 4395
chr17 1402382 1.68% 6039
chr18 421669 0.52% 1868
chr19 1393803 2.38% 5912
chr20 687984 1.07% 3062
chr21 393063 0.84% 1676
chr22 729417 1.44% 3197
chrX 557335 0.36% 2443
chrY 787 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 100592 1 1360 226.6 200
global segment-length histogram

Files

Filename Size md5
ENCFF115GAD.bed.gz 1.06 MB 862b3483ea317bb0e52af025dc4fdfd2
ENCFF115GAD.tabix.bed.gz 1014.63 KB 063d5fdfef78277a83551acb838da096
ENCFF115GAD.tabix.bed.gz.tbi 295.91 KB 16af694f140313baf24218299ab69a14
genomic_resource.yaml 1.21 KB 0b6f0593d3ad97cae74da7babd2073a9
statistics/