DNase-seq_ENCSR797FIM
DNase-seq ENCSR797FIM [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR797FIM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR797FIM [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF351LGN|/files/ENCFF351LGN/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR797FIM | float |
DNase-seq_ENCSR797FIM |
DNase-seq ENCSR797FIM [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
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[0.074, 13.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF831KBP.bed.gz | 524.64 KB | 41055467ee653c3cc97cdf6d98c4206b |
| ENCFF831KBP.bed.gz.dvc | 100.0 B | 0f706fbaea34f9e045740f297a34be31 |
| ENCFF831KBP.tabix.bed.gz | 477.47 KB | da2cce08fd09d568f0a4df188b1d1afa |
| ENCFF831KBP.tabix.bed.gz.dvc | 106.0 B | 019da758bf6952cb2554b2808df83b45 |
| ENCFF831KBP.tabix.bed.gz.tbi | 203.91 KB | 07cf319384b5df717d7778cb7ba0965c |
| ENCFF831KBP.tabix.bed.gz.tbi.dvc | 110.0 B | 81f43de6e10e0a166d7ab9140b102b0c |
| genomic_resource.yaml | 2.25 KB | 334673e801cc4b00245ecaac7da38736 |
| genomic_resource_original.yaml | 2.1 KB | 4ad8d29ff5dc576535b7478bf2562543 |
| statistics/ |