DNase-seq_ENCSR796YOJ
DNase-seq ENCSR796YOJ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR796YOJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR796YOJ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF958AIS|/files/ENCFF958AIS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR796YOJ | float |
DNase-seq_ENCSR796YOJ |
DNase-seq ENCSR796YOJ [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0601, 8.75] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF084BJV.bed.gz | 642.12 KB | 0b9bfacee4b435955db200a56c2ec8a3 |
| ENCFF084BJV.bed.gz.dvc | 100.0 B | c8ba6ca8ff9687a1e2bb8ab9c9acd04b |
| ENCFF084BJV.tabix.bed.gz | 593.21 KB | 0d51dbc76e8062ab1a6f0d3a1a63c886 |
| ENCFF084BJV.tabix.bed.gz.dvc | 106.0 B | c4303b818062f051c9c56df6e149019b |
| ENCFF084BJV.tabix.bed.gz.tbi | 199.08 KB | c26072ce9fee3c5760f44a790864dc5b |
| ENCFF084BJV.tabix.bed.gz.tbi.dvc | 110.0 B | e30b919200381bbea7b4a008312caa32 |
| genomic_resource.yaml | 2.28 KB | 5708e2bb4ca3b12736e509b78a57dffd |
| genomic_resource_original.yaml | 2.12 KB | 1f3ae1bb295bbde2e3709645ad2a3c07 |
| statistics/ |