DNase-seq_ENCSR796PIM
DNase-seq ENCSR796PIM [biosample_summary="Homo sapiens naive B cell female adult (39 years)"]
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| Id: | DNase-seq/ENCSR796PIM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR796PIM [biosample_summary="Homo sapiens naive B cell female adult (39 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (39 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF131MPK|/files/ENCFF131MPK/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR796PIM | float |
DNase-seq_ENCSR796PIM |
DNase-seq ENCSR796PIM [biosample_summary="Homo sapiens naive B cell female adult (39 years)"]
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[0.065, 17.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF824LVP.bed.gz | 547.03 KB | 3cd91247b0bd5fecc237d446c30f0a00 |
| ENCFF824LVP.bed.gz.dvc | 100.0 B | dd91caf3787a29270146dcd778dd4396 |
| ENCFF824LVP.tabix.bed.gz | 509.81 KB | 67189af1ded1fd66064e34c3bbf9c6c1 |
| ENCFF824LVP.tabix.bed.gz.dvc | 106.0 B | 21e1e5c30505713db5a2a3f270d005d8 |
| ENCFF824LVP.tabix.bed.gz.tbi | 172.9 KB | 0d1efcdfd269d18585f2749506d4ddb7 |
| ENCFF824LVP.tabix.bed.gz.tbi.dvc | 110.0 B | 233ce923af4f5f81a32afc89c3a7b972 |
| genomic_resource.yaml | 2.02 KB | 9226171fe923cff8e75c014fd7a2bfec |
| genomic_resource_original.yaml | 1.92 KB | 6fec8c03a865de5cd45852a73a32d312 |
| statistics/ |