| Id: | DNase-seq/ENCSR794TLA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR794TLA [biosample_summary="Homo sapiens natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (41 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF356WSQ|/files/ENCFF356WSQ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.36. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR794TLA | float |
DNase-seq_ENCSR794TLA |
DNase-seq ENCSR794TLA [biosample_summary="Homo sapiens natural killer cell female adult (41 years) treated with 100 ng/mL Interleukin-12 subunit alpha for 72 hours, 100 ng/mL Interleukin-15 for 72 hours, 100 ng/mL Interleukin-12 subunit beta for 72 hours, 100 ng/mL Interleukin-18 for 72 hours"]
|
 |
[0.0414, 23] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF829XGX.bed.gz | 1.05 MB | 34e2fd80b2174394eac937648b260ccd |
| ENCFF829XGX.bed.gz.dvc | 101.0 B | 5ac598954d89807d822d31e542271fcc |
| ENCFF829XGX.tabix.bed.gz | 985.91 KB | eb1f290ce90d3bf14caf5d1f0d37cb51 |
| ENCFF829XGX.tabix.bed.gz.dvc | 107.0 B | e4eea972915e4e98d651ec64fee04888 |
| ENCFF829XGX.tabix.bed.gz.tbi | 235.92 KB | fea880cd2653eb67fd263bddee316280 |
| ENCFF829XGX.tabix.bed.gz.tbi.dvc | 110.0 B | 4a7c5129dae5fd3178d82e2c500b1fa7 |
| genomic_resource.yaml | 3.03 KB | 8a46d31c56220829c39590d41379535c |
| genomic_resource_original.yaml | 2.74 KB | a6844c5ac70c45220e1a89bc5d77176f |
| statistics/ |