Resource

Id DNase-seq/ENCSR791BHEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR791BHE [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR791BHE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0011907/
  • biosample_summary: Homo sapiens gastrocnemius medialis tissue male adult (37 years)
  • date_created: 2019-10-08T17:48:09.152226+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR791BHE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR791BHE float

DNase-seq_ENCSR791BHE
DNase-seq ENCSR791BHE [biosample_summary="Homo sapiens gastrocnemius medialis tissue male adult (37 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR791BHE [7, 4.25e+03]
n
5,209,975
mean
67.1
sd
57.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 52099750.16% 34684
chr1 531753 0.21% 3540
chr2 414204 0.17% 2755
chr3 342150 0.17% 2276
chr4 194431 0.10% 1294
chr5 246900 0.14% 1641
chr6 304400 0.18% 2027
chr7 246450 0.15% 1638
chr8 216238 0.15% 1439
chr9 222556 0.16% 1482
chr10 259350 0.19% 1729
chr11 262301 0.19% 1747
chr12 248550 0.19% 1655
chr13 114450 0.10% 762
chr14 166650 0.16% 1108
chr15 184381 0.18% 1228
chr16 203980 0.23% 1360
chr17 269850 0.32% 1798
chr18 85295 0.11% 569
chr19 248400 0.42% 1656
chr20 142169 0.22% 946
chr21 56100 0.12% 373
chr22 121471 0.24% 810
chrX 122246 0.08% 813
chrY 5700 0.01% 38
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34684 49 300 150.21 150
global segment-length histogram

Files

Filename Size md5
ENCFF229BAI.bed.gz 347.84 KB 2c8f1078ea766fe649fcbc2836f33f1e
ENCFF229BAI.tabix.bed.gz 296.41 KB dcd034d2ab87df48b49c897b0829339e
ENCFF229BAI.tabix.bed.gz.tbi 202.32 KB 6ae6b5e09168bdf47bf76902e4769594
genomic_resource.yaml 2.02 KB 59455e1d8f13c6bb79cfc18a319ca356
statistics/