DNase-seq_ENCSR789FJF
DNase-seq ENCSR789FJF [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (87 years)"]
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| Id: | DNase-seq/ENCSR789FJF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR789FJF [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (87 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (87 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF238FDV|/files/ENCFF238FDV/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR789FJF | float |
DNase-seq_ENCSR789FJF |
DNase-seq ENCSR789FJF [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (87 years)"]
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[0.0572, 17.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF280SAO.bed.gz | 819.09 KB | 0cf4cf0b58b6434b4c9c4d18fbf959a7 |
| ENCFF280SAO.bed.gz.dvc | 100.0 B | d18afb470ee1931a45453280b384cbde |
| ENCFF280SAO.tabix.bed.gz | 745.7 KB | d0f3e6bb44fdcb7f93f4564448827f07 |
| ENCFF280SAO.tabix.bed.gz.dvc | 106.0 B | 8437ba197b30cfed6b66b4629ad57d52 |
| ENCFF280SAO.tabix.bed.gz.tbi | 281.1 KB | 9de2547551556dd1fa21a874b91181fb |
| ENCFF280SAO.tabix.bed.gz.tbi.dvc | 110.0 B | 46dfeb859bbdaae6613e623a0f268211 |
| genomic_resource.yaml | 2.08 KB | 804a60127f94fcf0bbfb5b1edf96e5fd |
| genomic_resource_original.yaml | 1.96 KB | 9ce404464c724b8d4410856347f307b1 |
| statistics/ |