DNase-seq_ENCSR788SKJ
DNase-seq ENCSR788SKJ [biosample_summary="Homo sapiens T-cell male adult (37 years)"]
×
| Id: | DNase-seq/ENCSR788SKJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR788SKJ [biosample_summary="Homo sapiens T-cell male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_warning: Alignment file {ENCFF346ZFK|/files/ENCFF346ZFK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 41573472 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR788SKJ | float |
DNase-seq_ENCSR788SKJ |
DNase-seq ENCSR788SKJ [biosample_summary="Homo sapiens T-cell male adult (37 years)"]
|
|
[0.241, 158] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF763HSO.bed.gz | 493.19 KB | 10d327540b1903137e937c6348fb4402 |
| ENCFF763HSO.bed.gz.dvc | 100.0 B | f07851d69493497674e974ef7d87cd72 |
| ENCFF763HSO.tabix.bed.gz | 446.01 KB | f05cbee6825a10f8bd45a56546ca2cb6 |
| ENCFF763HSO.tabix.bed.gz.dvc | 106.0 B | a1af6cd2e9fb11568cab03ab76c06d0c |
| ENCFF763HSO.tabix.bed.gz.tbi | 217.04 KB | 70096f7ccac858ab813b6ad8f30daae4 |
| ENCFF763HSO.tabix.bed.gz.tbi.dvc | 110.0 B | bc0c922cdf6239808abc32d5678e7298 |
| genomic_resource.yaml | 1.79 KB | 52622a426286bd20cb9a1ceb976cc442 |
| genomic_resource_original.yaml | 1.7 KB | a2ba081aad751ba2706c0d568bb65ffe |
| statistics/ |