Resource

Id DNase-seq/ENCSR788SKJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR788SKJ [biosample_summary="Homo sapiens T-cell male adult (37 years)"]
Description
Labels
  • accession: ENCSR788SKJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (37 years)
  • date_created: 2020-04-12T19:00:09.814962+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR788SKJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR788SKJ float

DNase-seq_ENCSR788SKJ
DNase-seq ENCSR788SKJ [biosample_summary="Homo sapiens T-cell male adult (37 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR788SKJ [0.241, 158]
n
7,638,271
mean
11.9
sd
17.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 76382710.24% 43659
chr1 769202 0.31% 4390
chr2 526743 0.22% 3020
chr3 404568 0.20% 2316
chr4 256621 0.13% 1469
chr5 330469 0.18% 1880
chr6 439324 0.26% 2523
chr7 347568 0.22% 1986
chr8 274045 0.19% 1588
chr9 306556 0.22% 1785
chr10 339211 0.25% 1957
chr11 385533 0.29% 2196
chr12 388946 0.29% 2230
chr13 152777 0.13% 871
chr14 273373 0.26% 1559
chr15 241318 0.24% 1404
chr16 326929 0.36% 1861
chr17 483421 0.58% 2731
chr18 117824 0.15% 680
chr19 537523 0.92% 2955
chr20 217894 0.34% 1262
chr21 89773 0.19% 529
chr22 196142 0.39% 1138
chrX 224673 0.14% 1285
chrY 7838 0.01% 44
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43659 10 631 174.95 170
global segment-length histogram

Files

Filename Size md5
ENCFF763HSO.bed.gz 493.19 KB 10d327540b1903137e937c6348fb4402
ENCFF763HSO.tabix.bed.gz 446.01 KB f05cbee6825a10f8bd45a56546ca2cb6
ENCFF763HSO.tabix.bed.gz.tbi 217.04 KB 70096f7ccac858ab813b6ad8f30daae4
genomic_resource.yaml 1.79 KB 52622a426286bd20cb9a1ceb976cc442
statistics/