| Id: | DNase-seq/ENCSR787ERP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR787ERP [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (25 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (25 years) output_type: peaks audit_warning: Alignment file {ENCFF626JAC|/files/ENCFF626JAC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 28968822 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR787ERP | float |
DNase-seq_ENCSR787ERP |
DNase-seq ENCSR787ERP [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (25 years)"]
|
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[0.38, 87.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF464HKL.bed.gz | 417.82 KB | bfb12c835791b7c72e97289ccb7924b7 |
| ENCFF464HKL.bed.gz.dvc | 100.0 B | 933d26de67edcaa75160d8c7737d187c |
| ENCFF464HKL.tabix.bed.gz | 378.56 KB | 3bde0b963bd3acaf32e4760789d34ff7 |
| ENCFF464HKL.tabix.bed.gz.dvc | 106.0 B | 1a2c17319968e2fb627e01e467fe8f73 |
| ENCFF464HKL.tabix.bed.gz.tbi | 193.85 KB | 5f8d4237352b81bb1a5a158ce41550c4 |
| ENCFF464HKL.tabix.bed.gz.tbi.dvc | 110.0 B | e23d69309d38a2a598b36928e1dfb1b4 |
| genomic_resource.yaml | 1.94 KB | d3de770af741ef13524ffda64dd85e47 |
| genomic_resource_original.yaml | 1.81 KB | b2985ed4832f889ff84d8266970a8315 |
| statistics/ |