DNase-seq_ENCSR785ZUI
DNase-seq ENCSR785ZUI [biosample_summary="Homo sapiens WTC11"]
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| Id: | DNase-seq/ENCSR785ZUI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR785ZUI [biosample_summary="Homo sapiens WTC11"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF715YXX|/files/ENCFF715YXX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR785ZUI | float |
DNase-seq_ENCSR785ZUI |
DNase-seq ENCSR785ZUI [biosample_summary="Homo sapiens WTC11"]
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[0.0565, 26] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF854DSG.bed.gz | 1.24 MB | 0d438b5c259ff2fab4ddb5f5d4adb616 |
| ENCFF854DSG.bed.gz.dvc | 101.0 B | 4899033db878180e1d040ad44f34612f |
| ENCFF854DSG.tabix.bed.gz | 1.14 MB | 0c0b13c3063452db333a65e62658204d |
| ENCFF854DSG.tabix.bed.gz.dvc | 107.0 B | 14ebf80b284dd7a85c9479a489bde79e |
| ENCFF854DSG.tabix.bed.gz.tbi | 431.87 KB | cdb030e36cff81b44d699e66237e3c96 |
| ENCFF854DSG.tabix.bed.gz.tbi.dvc | 110.0 B | 1f0514c64bf873f68f3a55b1b51463cf |
| genomic_resource.yaml | 1.9 KB | c573b413afa5721a4b70de962ba8d454 |
| genomic_resource_original.yaml | 1.83 KB | c2d37b49fa92ac34510c2b5bf4c0044b |
| statistics/ |