Resource

Id DNase-seq/ENCSR785RIMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR785RIM [biosample_summary="Homo sapiens T-cell male adult (49 years)"]
Description
Labels
  • accession: ENCSR785RIM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (49 years)
  • date_created: 2020-04-12T18:59:14.095417+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR785RIM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (49 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR785RIM float

DNase-seq_ENCSR785RIM
DNase-seq ENCSR785RIM [biosample_summary="Homo sapiens T-cell male adult (49 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR785RIM [0.186, 136]
n
9,048,276
mean
10.7
sd
15.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 90482760.28% 50818
chr1 904117 0.36% 5102
chr2 628584 0.26% 3577
chr3 492373 0.25% 2762
chr4 315811 0.17% 1752
chr5 404588 0.22% 2288
chr6 525796 0.31% 2950
chr7 418805 0.26% 2374
chr8 325566 0.22% 1852
chr9 363744 0.26% 2053
chr10 405336 0.30% 2287
chr11 464990 0.34% 2613
chr12 455791 0.34% 2545
chr13 187673 0.16% 1052
chr14 318660 0.30% 1782
chr15 289940 0.28% 1633
chr16 375527 0.42% 2108
chr17 554733 0.67% 3098
chr18 148177 0.18% 847
chr19 594595 1.01% 3218
chr20 258752 0.40% 1462
chr21 112119 0.24% 631
chr22 227174 0.45% 1287
chrX 265596 0.17% 1490
chrY 9829 0.02% 55
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50818 4 740 178.05 180
global segment-length histogram

Files

Filename Size md5
ENCFF025ORJ.bed.gz 570.54 KB dad875f5cf353bcb4db62f7c39e5ac1e
ENCFF025ORJ.tabix.bed.gz 516.5 KB e1a05a3789d310e4f3930df2ff86e3d7
ENCFF025ORJ.tabix.bed.gz.tbi 241.37 KB a8c36e635e8fc91df8d3795a98733c87
genomic_resource.yaml 1.79 KB 9473d597e15d486215ff5cd376655ac1
statistics/