Resource

Id DNase-seq/ENCSR785MXIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR785MXI [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (88 years)"]
Description
Labels
  • accession: ENCSR785MXI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (88 years)
  • date_created: 2020-11-04T06:14:32.296605+00:00
  • date_released: 2021-01-12
  • doi: 10.17989/ENCSR785MXI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (88 years) with mild cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR785MXI float

DNase-seq_ENCSR785MXI

DNase-seq ENCSR785MXI [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (88 years)"]
HISTOGRAM FOR DNase-seq_ENCSR785MXI [0.0695, 21.7]
n
17,075,145
mean
2.52
sd
2.71

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 170751450.53% 89168
chr1 1660834 0.67% 8557
chr2 1222986 0.50% 6479
chr3 992823 0.50% 5209
chr4 657096 0.35% 3416
chr5 882276 0.49% 4630
chr6 901669 0.53% 4701
chr7 887537 0.56% 4669
chr8 736522 0.51% 3870
chr9 780599 0.56% 4076
chr10 749719 0.56% 3980
chr11 960963 0.71% 5014
chr12 831679 0.62% 4291
chr13 375449 0.33% 1996
chr14 554841 0.52% 2872
chr15 578352 0.57% 2989
chr16 680134 0.75% 3528
chr17 940288 1.13% 4863
chr18 340833 0.42% 1836
chr19 817192 1.39% 4145
chr20 504455 0.78% 2700
chr21 171455 0.37% 895
chr22 437909 0.86% 2311
chrX 409272 0.26% 2139
chrY 262 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 89168 1 800 191.49 180
global segment-length histogram

Files

Filename Size md5
ENCFF863YIN.bed.gz 985.39 KB a6646cc7312cc237818a73274d904a6d
ENCFF863YIN.tabix.bed.gz 901.49 KB fd27ef5e9dc10e4db21a3196e1ca4256
ENCFF863YIN.tabix.bed.gz.tbi 346.54 KB b3e921d4642b0b57abed35b1ebb5c55f
genomic_resource.yaml 1.44 KB dd5b6cbce62ccbc812e7d02870b3fe89
statistics/