Resource

Id DNase-seq/ENCSR785JXRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR785JXR [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)"]
Description
Labels
  • accession: ENCSR785JXR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002171/
  • biosample_summary: Homo sapiens lower lobe of right lung tissue male adult (60 years)
  • date_created: 2019-04-10T20:29:46.545744+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR785JXR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (60 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR785JXR float

DNase-seq_ENCSR785JXR

DNase-seq ENCSR785JXR [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)"]
HISTOGRAM FOR DNase-seq_ENCSR785JXR [0.0417, 51.1]
n
24,867,902
mean
1.89
sd
3.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 248679020.77% 128846
chr1 2164202 0.87% 11289
chr2 1770285 0.73% 9187
chr3 1215601 0.61% 6398
chr4 972626 0.51% 4980
chr5 945945 0.52% 5001
chr6 970657 0.57% 5250
chr7 1332660 0.84% 6864
chr8 1027178 0.71% 5196
chr9 1236464 0.89% 6318
chr10 1179616 0.88% 6093
chr11 1522773 1.13% 7749
chr12 1007592 0.76% 5299
chr13 428427 0.37% 2260
chr14 833526 0.78% 4300
chr15 722127 0.71% 3825
chr16 1237496 1.37% 6393
chr17 1671079 2.01% 8609
chr18 363407 0.45% 1909
chr19 1345983 2.30% 6933
chr20 867303 1.35% 4467
chr21 448948 0.96% 2248
chr22 1131727 2.23% 5768
chrX 458513 0.29% 2422
chrY 13767 0.02% 88
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 128846 1 1060 193 180
global segment-length histogram

Files

Filename Size md5
ENCFF752THQ.bed.gz 1.32 MB fe58f91d2de20ff9515c7b98f7b370d0
ENCFF752THQ.tabix.bed.gz 1.23 MB 0c493b27ba126e95cc2a7e0fe821e36b
ENCFF752THQ.tabix.bed.gz.tbi 306.38 KB 4ba0a73368ce38dfb976589b2dad4648
genomic_resource.yaml 1.26 KB f0c300b2c79eb29055b8d1829a5e531d
statistics/