Resource

Id DNase-seq/ENCSR784RMAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR784RMA [biosample_summary="Homo sapiens T-cell male adult (36 years)"]
Description
Labels
  • accession: ENCSR784RMA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (36 years)
  • date_created: 2020-04-12T19:00:07.274656+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR784RMA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (36 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR784RMA float

DNase-seq_ENCSR784RMA

DNase-seq ENCSR784RMA [biosample_summary="Homo sapiens T-cell male adult (36 years)"]
HISTOGRAM FOR DNase-seq_ENCSR784RMA [0.151, 119]
n
9,261,285
mean
9.71
sd
13.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 92612850.29% 52616
chr1 923273 0.37% 5250
chr2 636555 0.26% 3630
chr3 494730 0.25% 2819
chr4 322103 0.17% 1796
chr5 409761 0.23% 2337
chr6 532233 0.31% 2999
chr7 421371 0.26% 2416
chr8 342839 0.24% 1959
chr9 375827 0.27% 2158
chr10 413196 0.31% 2372
chr11 478448 0.35% 2717
chr12 472137 0.35% 2645
chr13 186780 0.16% 1055
chr14 323782 0.30% 1841
chr15 302902 0.30% 1733
chr16 392403 0.43% 2247
chr17 567989 0.68% 3214
chr18 149997 0.19% 857
chr19 619154 1.06% 3424
chr20 262084 0.41% 1513
chr21 112121 0.24% 647
chr22 234351 0.46% 1341
chrX 277325 0.18% 1588
chrY 9924 0.02% 58
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52616 5 620 176.02 160
global segment-length histogram

Files

Filename Size md5
ENCFF771HQR.bed.gz 582.92 KB be06b24a6892b3dd5fc3bb67ea60a3e9
ENCFF771HQR.tabix.bed.gz 538.9 KB 71125f1545ef0641b5e6cfe6eddfc354
ENCFF771HQR.tabix.bed.gz.tbi 240.39 KB c5f1c35ed0dcfa5f118345019a63d43b
genomic_resource.yaml 1.18 KB dad3c1333de9b06bc86fb1475c3f5dc6
statistics/